Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0377.Seq
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    30   1.6  
08_02_0934 + 22747742-22748644                                         29   2.2  
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686     29   2.9  
07_01_0327 + 2289472-2289978,2290016-2290444,2290688-2290750,229...    27   8.7  
05_01_0219 + 1638318-1638553,1639186-1639336,1639504-1639611,163...    27   8.7  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    27   8.7  

>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 428  YTCQRPSA-RSFRFLPFLSRHVRRLSPSSSK 339
            Y CQ P   ++FRF+   SRH R+   SS K
Sbjct: 1313 YECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343


>08_02_0934 + 22747742-22748644
          Length = 300

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 440 SVIRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKXGAXVRVP 315
           SV R    +P+  SF  LPF+ +  R   PSSS  G+ V  P
Sbjct: 2   SVERDGRDQPNIDSFSQLPFIRQAAREKPPSSSSGGSVVVPP 43


>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
          Length = 601

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 506 RKVPPDAPCSCALSAAGVVVTRSVIRY 426
           R++ PDAP S A SAAG+   R V+ +
Sbjct: 332 REIDPDAPFSVAFSAAGMGWARYVVAF 358


>07_01_0327 +
           2289472-2289978,2290016-2290444,2290688-2290750,
           2290845-2291126
          Length = 426

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -1

Query: 464 AAGVVVTRSVIRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKXGAXVRVPI*CF 303
           A GV+      R  C RP   +   L FL R VRR    SS+ G  +R P   F
Sbjct: 102 AGGVLAAMLFARGPCGRPMYSADDALGFLLRRVRRRG-WSSRAGGLLRRPAGAF 154


>05_01_0219 +
           1638318-1638553,1639186-1639336,1639504-1639611,
           1639755-1639847,1639973-1640056,1640314-1640384,
           1640461-1640529,1640686-1640779,1640897-1640986,
           1641082-1641162,1641341-1641433,1641650-1641730,
           1641815-1641884,1642022-1642110
          Length = 469

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 475 QLQGASGGTFREMCAEPLF 531
           +++GA GG +R +CA P+F
Sbjct: 340 EMRGADGGPWRRLCALPVF 358


>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
            39490623-39491432,39491738-39493035
          Length = 1205

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 428  YTCQRPS-ARSFRFLPFLSRHVRRLSPSSSK 339
            Y C  P  A++FRF+   SRH R+   S  K
Sbjct: 1169 YVCHEPGCAQTFRFVSDFSRHKRKTGHSVKK 1199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,909,212
Number of Sequences: 37544
Number of extensions: 285694
Number of successful extensions: 621
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)