Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0377.Seq
         (605 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060753-1|AAL28301.1|  271|Drosophila melanogaster GH20409p pro...    29   6.5  
AE014134-406|AAF51257.1|  271|Drosophila melanogaster CG3557-PA ...    29   6.5  
AY051988-1|AAK93412.1| 1013|Drosophila melanogaster LD45559p pro...    28   8.6  
AE014296-558|AAF47714.2|  983|Drosophila melanogaster CG1869-PA ...    28   8.6  

>AY060753-1|AAL28301.1|  271|Drosophila melanogaster GH20409p
           protein.
          Length = 271

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -1

Query: 533 TNRGSAHISRKVPPDAPCS---CALSAAGVVVTRSVIRYTCQRPS 408
           +N GSA      PP APC+   C+  ++    + S     C +PS
Sbjct: 63  SNEGSAFKKESCPPPAPCAPSPCSSGSSSAYPSSSAWSTCCSKPS 107


>AE014134-406|AAF51257.1|  271|Drosophila melanogaster CG3557-PA
           protein.
          Length = 271

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -1

Query: 533 TNRGSAHISRKVPPDAPCS---CALSAAGVVVTRSVIRYTCQRPS 408
           +N GSA      PP APC+   C+  ++    + S     C +PS
Sbjct: 63  SNEGSAFKKESCPPPAPCAPSPCSSGSSSAYPSSSAWSTCCSKPS 107


>AY051988-1|AAK93412.1| 1013|Drosophila melanogaster LD45559p protein.
          Length = 1013

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 184  KSPLLKNVDSNVKGRKTVYQGDGPYVNHHPNQVF 285
            K PLL  ++  +K  K   + DGPY +H P   +
Sbjct: 908  KYPLLTALNDELKDYKVELEYDGPYESHGPRGAY 941


>AE014296-558|AAF47714.2|  983|Drosophila melanogaster CG1869-PA
            protein.
          Length = 983

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 184  KSPLLKNVDSNVKGRKTVYQGDGPYVNHHPNQVF 285
            K PLL  ++  +K  K   + DGPY +H P   +
Sbjct: 908  KYPLLTALNDELKDYKVELEYDGPYESHGPRGAY 941


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,973,730
Number of Sequences: 53049
Number of extensions: 475220
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)