Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0374.Seq
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   7.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.6  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 207 CELVDNIDNIY 239
           CELVD  +NIY
Sbjct: 230 CELVDAFNNIY 240


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 254 RRLEKTNKKSWD 289
           RRL+K NK +W+
Sbjct: 140 RRLKKENKMTWE 151


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 400 NIYSVTFLLRIRSFVNIKRHGTSTKILRYVQNVIDTSVP 284
           N+ S+    +  SF++  R+G    ++   +NV +   P
Sbjct: 577 NVSSIPIYFKWLSFLSWFRYGNGALMINQWENVTNIQCP 615


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 400 NIYSVTFLLRIRSFVNIKRHGTSTKILRYVQNVIDTSVP 284
           N+ S+    +  SF++  R+G    ++   +NV +   P
Sbjct: 577 NVSSIPIYFKWLSFLSWFRYGNGALMINQWENVTNIQCP 615


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,574
Number of Sequences: 336
Number of extensions: 3240
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)