Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0374.Seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    29   0.64 
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   1.1  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.9  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    26   4.5  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   4.5  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   5.9  

>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 263 EKTNKKSWDACIDYVLNIPEYFCT 334
           E+ +++ WD  I Y L+ PE+ CT
Sbjct: 693 EQADRELWDDLISYSLDKPEFICT 716


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 288 SQDFLFVFSSRRISSSGIC 232
           S D L++F  RR SSSGIC
Sbjct: 923 SSDGLYIFGMRRKSSSGIC 941


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -2

Query: 406 PSNIYSVTFLLRIRSFVNIK-RHGTSTKILRYVQNVIDTSVPRFFICFFESAYLLVRYML 230
           PS+     FL + +S +N+  +  + T  LR +Q  + TS   FF+   + A L   Y+ 
Sbjct: 273 PSSPEEKPFLTQFQSILNLSDKFLSKTGTLR-LQEKLGTSCNLFFVLVLKLALLSSSYIG 331

Query: 229 SMLSTSSQSVQHTMGSLPRTP 167
            +  T S  +   +GS+   P
Sbjct: 332 FVPYTYSDWINVLLGSISEDP 352


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = -2

Query: 502 QPLRLLRARPEPQQRHEGELRSFGV-FTAYR*LPSNIYSVTFLL--RIRSFVN-IKRHGT 335
           +P  L  A+  P++ HE  LRSF + F  +   P+ +  V  +       FVN +K   T
Sbjct: 276 EPTLLYLAQYRPEKNHENVLRSFALYFEQHPDSPAKLLLVGSVRGEEDMCFVNHLKTLAT 335

Query: 334 STKILRYVQNVIDTSVPRFFICFFESAYLLVRYM 233
              +   V+ V+D   P+  + +  +  + V YM
Sbjct: 336 ELNLQSKVKFVVDAPWPK-VVEYLGTCSIGVNYM 368


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 236 IPDEEIRRLEKTNKKSWDACIDYVLNIPEYF 328
           +PDEE+ +L  TN K W+  +  + +  E++
Sbjct: 91  LPDEELCQLRLTNMKLWNCKLPSLKDEAEFY 121


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 269 TNKKSWDACIDYVLNIPEYFCTST 340
           T   SW  CI YV++ P    TST
Sbjct: 131 TLASSWPTCIAYVVDTPRATSTST 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,420
Number of Sequences: 5004
Number of extensions: 50564
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)