Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0374.Seq
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1007 + 23268771-23269021,23269098-23269128 33 0.16
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 31 1.1
08_01_0955 + 9478018-9478773 31 1.1
01_06_0604 + 30536172-30537143 31 1.1
01_01_0099 - 751627-752126,752866-753056,753188-753945 31 1.1
10_08_0860 - 21136509-21136997 30 2.0
02_01_0530 - 3853274-3853666 29 2.6
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 3.5
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 29 4.6
03_03_0177 + 15140414-15140777,15142067-15142239 28 6.1
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 28 6.1
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 28 6.1
05_04_0305 + 20052813-20053996,20055774-20055861,20056470-200565... 28 8.1
03_05_0329 - 23211636-23211857,23211946-23212079,23212170-232124... 28 8.1
>07_03_1007 + 23268771-23269021,23269098-23269128
Length = 93
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 476 ASAEEAQWLCGGRCSPRGTSSRRRTASPS 562
+S+ + QW C GR SP+ T +RR+ +PS
Sbjct: 45 SSSSKRQWRCDGRTSPQHTRFQRRSKAPS 73
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = -2
Query: 607 VRGSVSPAASELTGVARRCSAPP*GCTARRAPTAAQPLRLLRARPEPQQRH 455
V+G+ P+ S + A R S PP G A A AA+ LR + A P+P H
Sbjct: 59 VKGTRRPSWSSWSSTASRSSPPP-GRGAPSAAAAAE-LRSVPAGPDPMHHH 107
>08_01_0955 + 9478018-9478773
Length = 251
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = -2
Query: 598 SVSPAASELTGVARRCSAPP*GCT-ARRAPTAAQPLRLLRARPEPQQRHEGELRSF 434
S +PA + G +APP T R AP P R RA P P + R +
Sbjct: 81 SATPATAPCAGAGSTTTAPPAAWTCTRAAPRCRCPSRCRRAAPPPSSSKNTDQRMY 136
>01_06_0604 + 30536172-30537143
Length = 323
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 285 QDFLFVFSSRRISSSGICYRCCPRAHSRC-STRWAPCRAPRTPAGR 151
+D +FSSR SS + CPR ++R ++ PCRAP P+ R
Sbjct: 182 EDSRNLFSSRSFSSDSSDFYNCPRKNTRARASVSGPCRAP-PPSSR 226
>01_01_0099 - 751627-752126,752866-753056,753188-753945
Length = 482
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 138 YRDRSFPPVCGVRGKEPIVCCTDCELVDNIDN-IYLTR--RYADSKKQIKNLGTLVS 299
+R R PP CGV E + CTD + + +DN YL R Y D+ + + L S
Sbjct: 60 FRRRGDPPECGVASYE--LTCTDDKAIIQVDNGTYLVRGINYTDATFSVVDANMLDS 114
>10_08_0860 - 21136509-21136997
Length = 162
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 455 MALLGFGASAEEAQWLCGGRCSPRGTSSRRRTASPSHA 568
M+LL F A+ EA CGGRC+ G + R R A P+ A
Sbjct: 22 MSLLVFAAAPSEA---CGGRCN--GGACRSRCAKPTPA 54
>02_01_0530 - 3853274-3853666
Length = 130
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/32 (56%), Positives = 18/32 (56%)
Frame = +3
Query: 522 RAVHPHGGALHLRATPVSSLAAGLTLPRTRTH 617
R V P A RA P SSLAAG T P T TH
Sbjct: 100 RFVLPAAAAAAARAHP-SSLAAGRTAPATATH 130
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -2
Query: 610 RVRGSVSPAASELTGVARRCSAPP*GCTARRAPTAAQPLRLLRARPEPQQRHEGEL 443
R G + P A+ RR + PP R A AA P R L P P+ EL
Sbjct: 152 RPGGRLVPVAASPGSPGRRLAQPPPRPGGRLAQAAASPFRCLYRPPPPRPSRLREL 207
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 568 GVARRCSAPP*GCTARRAPTAAQPLRLLRARPEPQQRHEGELRSFGV 428
GV R APP G RRAP P L RP ++ G + G+
Sbjct: 2 GVTTRLPAPPGGGLQRRAPRGILPASLPVERPARRRLAPGVRAASGI 48
>03_03_0177 + 15140414-15140777,15142067-15142239
Length = 178
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -2
Query: 688 IPRAAYFKGPCGRQGVLFIGV*CLCVRVRGSVSPAASELTGVARRCSAPP*GCTARRAPT 509
I RA + CG F CL SV+P S +G A +AP G A R+P
Sbjct: 100 ITRALHLPAACGADASAFSK--CLAPAPSPSVAPGTSSGSGGA--AAAPAKGAAAARSPM 155
Query: 508 AA 503
A+
Sbjct: 156 AS 157
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -2
Query: 523 RRAPTAAQPLRLLRARPEPQQRHEGEL 443
RRA +AA + ++R+ P+PQQ+ + +L
Sbjct: 10 RRASSAAAAVAVVRSSPQPQQQQQQQL 36
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 151 PSRRCAGCAARSPSCAAPTVSS 216
P CAGCAA SPS +PT SS
Sbjct: 129 PCSACAGCAASSPS-FSPTQSS 149
>05_04_0305 +
20052813-20053996,20055774-20055861,20056470-20056522,
20056585-20056615
Length = 451
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 552 AVRRREDVPRGEHRPPH 502
AV RRE P G+HR PH
Sbjct: 324 AVLRREGKPEGQHRVPH 340
>03_05_0329 -
23211636-23211857,23211946-23212079,23212170-23212476,
23212760-23213113
Length = 338
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 3 CAVLCALLPARHGPAAADVEGAPCVRDGYNGTCVLSKRCETLILNYRD 146
C L A + PA ++ A DGY +CV +R E L+L+ D
Sbjct: 133 CVSLAAKMEEYRAPALSEFR-AGVGDDGYEFSCVCIRRMELLVLSTLD 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,835,089
Number of Sequences: 37544
Number of extensions: 412005
Number of successful extensions: 1500
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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