Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0374.Seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23364| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)                   31   1.2  
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_44999| Best HMM Match : RepA_N (HMM E-Value=1.9)                    29   3.6  
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)                29   4.7  
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         28   8.3  

>SB_23364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 20/91 (21%), Positives = 41/91 (45%)
 Frame = -2

Query: 391 SVTFLLRIRSFVNIKRHGTSTKILRYVQNVIDTSVPRFFICFFESAYLLVRYMLSMLSTS 212
           SV+    + + + ++++G S  ++ +    +  ++ R  +  F  +  L+ Y    L  S
Sbjct: 2   SVSLHAHLHTCIKVRKYGFSCCVIPFAPVTVICTL-RLIV--FPISLRLIVYAFDQLPLS 58

Query: 211 SQSVQHTMGSLPRTPHTGGKDLSL*FRMSVS 119
           + ++ H + S    P TGG D  L  R   S
Sbjct: 59  TPNIIHPISSFQVRPETGGSDWELLVRREAS 89


>SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)
          Length = 157

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 511 SVLSARYILTAAHCISEPRLS 573
           S++ AR+I+TA HC  +PR S
Sbjct: 82  SLIEARWIITAGHCFKDPRSS 102


>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 323 YFCTSTVTFNINKASDSEKKCHRINITWQSPVGGEDAERAEFPF 454
           +FCT   T+   K     K C R+ I   +  G +D  R E PF
Sbjct: 197 HFCTEMYTYKDGKTH--MKSCKRLPIECVNKCGAKDIPREEMPF 238


>SB_44999| Best HMM Match : RepA_N (HMM E-Value=1.9)
          Length = 402

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 358 VNIKRHGTSTKILRYVQNVIDTSVPRFFIC---FFESAYLLVRYMLSMLSTSSQS 203
           + ++R G S  +   V   + T + + +IC    FE  Y L+  MLS+  +  +S
Sbjct: 56  LTLQRQGVSDDLKHDVVRCMQTLISKIYICKFAIFEDVYTLLTVMLSLRESPGKS 110


>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
          Length = 114

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 565 VARRCSAPP*GCTARRAPTAAQPLRLLRARPEPQQRHEGELRSFGVFTA 419
           V   C+ PP G +   A T   PL  L+   + Q +H   +  FG   A
Sbjct: 53  VGTPCTPPPLGLSTCCAKTTTAPLERLKILFQAQNKHYKNMSVFGALKA 101


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 264 SSRRISSSGICYRCCPRAHSRCSTRWAPCRAPRTPAGRIY 145
           S+ R + S   Y  C   +S C+ R+ PC    TP    Y
Sbjct: 654 STERYTPSTERYTPCTERYSPCTERYTPCTERYTPCTERY 693


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 511  SVLSARYILTAAHCISEPRLSVHSPPG-SRYHAHAHTN 621
            S++++++I+TAAHC++        PPG SRY  +A ++
Sbjct: 1812 SIVNSQWIVTAAHCVTT------KPPGASRYTMYAFSD 1843


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,920,683
Number of Sequences: 59808
Number of extensions: 453315
Number of successful extensions: 1369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)