Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0374.Seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell l...    30   1.4  
AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.     30   1.4  
Z32681-7|CAA83603.1|  108|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AB009658-1|BAA82662.1|  108|Caenorhabditis elegans Ceinsulin-2 p...    28   5.5  
Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    28   7.3  
U55856-1|AAA98020.1|  162|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical...    28   7.3  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    28   7.3  

>U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell
           lineage protein 23 protein.
          Length = 665

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 299 DYVLNIPEYFCTSTVTFNINKASDSEKKCHRINITWQ 409
           D++ N+P +     + FN+N  SDS K C  ++ +W+
Sbjct: 82  DFISNLPAHL-VELILFNVN--SDSLKSCEEVSTSWR 115


>AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.
          Length = 665

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 299 DYVLNIPEYFCTSTVTFNINKASDSEKKCHRINITWQ 409
           D++ N+P +     + FN+N  SDS K C  ++ +W+
Sbjct: 82  DFISNLPAHL-VELILFNVN--SDSLKSCEEVSTSWR 115


>Z32681-7|CAA83603.1|  108|Caenorhabditis elegans Hypothetical
           protein F56F3.6 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 30  ARHGPAAADVEGAPCVRDGYNGTCVLSKRCETLILNYRDRSFPPVCGVRGKEPIVCC-TD 206
           A+HG       G     D +N  C + +R  ++  NY D        + G+   +CC T 
Sbjct: 39  AKHGSLKLCPPGGASFLDAFNLICPMRRRRRSVSENYNDGG----GSLLGRTMNMCCETG 94

Query: 207 CELVD 221
           CE  D
Sbjct: 95  CEFTD 99


>AB009658-1|BAA82662.1|  108|Caenorhabditis elegans Ceinsulin-2
           protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 30  ARHGPAAADVEGAPCVRDGYNGTCVLSKRCETLILNYRDRSFPPVCGVRGKEPIVCC-TD 206
           A+HG       G     D +N  C + +R  ++  NY D        + G+   +CC T 
Sbjct: 39  AKHGSLKLCPPGGASFLDAFNLICPMRRRRRSVSENYNDGG----GSLLGRTMNMCCETG 94

Query: 207 CELVD 221
           CE  D
Sbjct: 95  CEFTD 99


>Z82077-2|CAB04940.1|  722|Caenorhabditis elegans Hypothetical
           protein W09C5.5 protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 260 VGVSPRQVYVIDVVHELTVGAAHDG--LLAAHPAH 162
           +GV+P +VY I  + E+T    ++G  +LA HP H
Sbjct: 318 IGVNPNRVYRIIPLAEITSVVQNNGKSVLAKHPPH 352


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 169 GCAARSPSCAAPTVSSWTTSITYT*RGDTPTRKN 270
           G A R PS  +PTVSSW   +    +  T T  N
Sbjct: 557 GAAPRIPSPVSPTVSSWQPPVREDIQPTTSTATN 590


>U55856-1|AAA98020.1|  162|Caenorhabditis elegans Hypothetical
           protein F31E8.4 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 280 FFICFFESAYLLVRYMLSMLSTSSQSVQHTMGSLPRTPHTGGKDLS 143
           F +C    A    RY L++ +   +  +H   S+    ++GG ++S
Sbjct: 36  FLLCILYEAIKSFRYFLAVWNNQKRQQRHAEASITNPQNSGGDNIS 81


>AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical
           protein Y17G7B.19 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = +3

Query: 60  EGAPCVRD-------GYNGTCVLSKRCETLILNYRDRSFPPVCGVRGKEPIVCC 200
           E APC++D        + GTCV  +    ++ N R + FP    V+ K   +CC
Sbjct: 48  EQAPCLKDEECDLFPDFLGTCVHHQNVTNILENRRFKYFPTNNNVKPKGYGMCC 101


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 169 GCAARSPSCAAPTVSSWTTSITYT*RGDTPTRKN 270
           G A R PS  +PTVSSW   +    +  T T  N
Sbjct: 557 GAAPRIPSPVSPTVSSWQPPVREDIQPTTSTATN 590


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,820
Number of Sequences: 27780
Number of extensions: 311754
Number of successful extensions: 879
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)