Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0374.Seq
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    29   0.042
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.68 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 511 SVLSARYILTAAHCI 555
           +++S RY+LTAAHCI
Sbjct: 191 TIISKRYVLTAAHCI 205


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +3

Query: 516 ALRAVHP-HG-----GALHLRATPVSSLAAGLTLPRTRTHKH*TPINSTPC 650
           A+R  HP HG     G  +       +L+  LTL R +  +H  P+NS  C
Sbjct: 354 AMRLSHPLHGNLLPPGVCYTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVC 404


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 156 PPVCGVRGKEPIVCCTDC 209
           PP     G   IV CT+C
Sbjct: 413 PPTGATTGPNEIVTCTNC 430


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 156 PPVCGVRGKEPIVCCTDC 209
           PP     G   IV CT+C
Sbjct: 399 PPTGATTGPNEIVTCTNC 416


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 156 PPVCGVRGKEPIVCCTDC 209
           PP     G   IV CT+C
Sbjct: 433 PPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 156 PPVCGVRGKEPIVCCTDC 209
           PP     G   IV CT+C
Sbjct: 382 PPTGATTGPNEIVTCTNC 399


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 659  LRTTGRAVYWRLVFVCACAW*REPGGE 579
            L+TTG AVY R++        + PG +
Sbjct: 1265 LKTTGAAVYARVIAPTTITSSQSPGNQ 1291


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
            75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = -2

Query: 241  RYMLSMLSTSSQSVQHTMGSLPRTPHTGGKDLSL*FRMSVSQRLLSTHVPL*PSRTHGAP 62
            RY+ +  ++S+ +      S   T    G   ++   M +   +  +  PL  S+   +P
Sbjct: 828  RYLSAAATSSTSTSPRPASSTAATLVLSGCPSNM---MELQVDIADSQQPLNLSKKSPSP 884

Query: 61   STSAAAGPCRA 29
            S     GPC+A
Sbjct: 885  SPRPLVGPCKA 895


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,990
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)