Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0374.Seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR...    29   2.9  
At3g59420.1 68416.m06627 receptor protein kinase, putative (ACR4...    29   3.9  
At4g22230.2 68417.m03216 expressed protein                             28   5.1  
At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6) i...    28   6.8  
At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6) i...    28   6.8  
At3g25850.1 68416.m03220 DC1 domain-containing protein similar t...    27   8.9  

>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1556

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 242 DEEIRRLEKTNKKSWDACIDYVLNIPEYFCTSTVTFNINKASDSEK 379
           +E+ +  ++   + W   ++ V NIP Y CT+    + N+  + EK
Sbjct: 290 EEKAKSFDEETIQRWKRAMNLVGNIPGYVCTAKTVGDDNEGINREK 335


>At3g59420.1 68416.m06627 receptor protein kinase, putative (ACR4)
           identical to putative receptor protein kinase ACR4
           [Arabidopsis thaliana] GI:20302590; contains protein
           kinase domain, Pfam:PF00069
          Length = 895

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = -2

Query: 634 IGV*CLCVRVRGSVSPAASELTGVARRCSAPP*GCTARRAPTAAQPLRLLRARPEPQQRH 455
           + V C CVR+RG   P+  ++T    R  A   G  +   P     + L  +R   +   
Sbjct: 761 VSVACKCVRMRGKDRPSMDKVTTALERALAQLMGNPSSEQPILPTEVVLGSSRMHKKSWR 820

Query: 454 EGELRSFGVFTAYR 413
            G  RS    T +R
Sbjct: 821 IGSKRSGSENTEFR 834


>At4g22230.2 68417.m03216 expressed protein
          Length = 91

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = +3

Query: 3   CAVLCALLPARHGPAAADVEGAPCVRDGYNGTCVLSKRCETLILNYRDRSFPPVCGVRGK 182
           C  +  + P   G    D +   C     + TC+  + C+ L   +      PV G+ G 
Sbjct: 16  CLSILLISPTVDGRQVCDYDKGECNSYEKSSTCI--EPCKQLDSKFIGGRCIPVGGITGM 73

Query: 183 EPIVCCTDCE 212
              VCC D +
Sbjct: 74  GLCVCCRDVQ 83


>At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 147 RSFPPVCGVRGKEPIVCCTDCELVDNI 227
           R FPP CG R  E  + C +  +V+++
Sbjct: 59  RDFPPGCGSRAMEVKIACENGNVVEDV 85


>At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 147 RSFPPVCGVRGKEPIVCCTDCELVDNI 227
           R FPP CG R  E  + C +  +V+++
Sbjct: 59  RDFPPGCGSRAMEVKIACENGNVVEDV 85


>At3g25850.1 68416.m03220 DC1 domain-containing protein similar to
           unknown protein GB:AAC79144 from [Arabidopsis thaliana]
          Length = 258

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 165 CGVRGKEPIVCCTDCELVDNIDNIYLTR 248
           C V GK     C +C L+ + D IYL R
Sbjct: 135 CSVEGKRNPYVCLECNLMFHKDCIYLPR 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,919,084
Number of Sequences: 28952
Number of extensions: 284422
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)