Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0371.Seq
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          29   0.043
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    26   0.30 
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    26   0.30 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 249 GVYCPEKTNGVYKEKSIKYTVSSK--MKLERVDQIPAPNAYCPEKADRILREKSPAFSFR 76
           G Y PEK+  + K+K +K  +  +   K ++ D       Y     D ++ +     +FR
Sbjct: 201 GAYGPEKSASIPKKKEVKEEIEDEPDHKWKKNDSSKKKTRYYYRSVDDVIEKGKRPGAFR 260

Query: 75  TK--SEITKV 52
           T   SE++KV
Sbjct: 261 TTLGSELSKV 270


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 439 PSFASPSTGGIE*VLGALAVIPSDCRKQVQVQPLLY 546
           P    P  GG+E   G + +  S+  K+ + QP+L+
Sbjct: 155 PKTVVPEVGGVEEAKGPVDLSKSEPEKKTESQPMLW 190


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 340 LSVVYVPGPGINPLASENFP 399
           +S+ Y+PGP +N + S N P
Sbjct: 34  ISLSYLPGPPVNDIISGNIP 53


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = -1

Query: 452 EAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPP--AFTMAPRREL 279
           +AK   +       ++ R     + G+ PG          AA+  RPP  AF  AP   L
Sbjct: 169 KAKRLQEAELEKLRLSARPLLPPSFGIFPGGAPPLVSPFLAAMAHRPPHFAFPGAPGHIL 228

Query: 278 KPP 270
             P
Sbjct: 229 NIP 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,801
Number of Sequences: 336
Number of extensions: 4143
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)