Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0371.Seq
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 29 1.0
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.8
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 27 2.4
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 27 3.1
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 3.1
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 27 3.1
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 27 3.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 5.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.4
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 26 5.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.2
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 7.2
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 428 LFYSLLSLRQVPVA*NKYWVL*--QSFLLIVGSRSRSSLCYISKR 556
+F+ LLS + +PV+ + Y+ L +SF +VGS SR + +S R
Sbjct: 166 VFHQLLSAKNLPVS-SSYFSLANWESFAFLVGSMSRFNFVMVSDR 209
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 395 KFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVPVP 249
K+S + P P T +A +RPP+ PRR+ P A+ +P
Sbjct: 185 KYSAPSKIYPSPRRSTAATLESAYEERPPSL---PRRKPSRPGTAITLP 230
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -1
Query: 515 LQSEGMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRA 336
LQ+ + + P+ YS+ L S A +++ GRG S + L G TT+
Sbjct: 416 LQNLSLVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLR--RGLETTEIV 473
Query: 335 AAALTKRPPA 306
A+ L P A
Sbjct: 474 ASELPGAPIA 483
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 364 PGINPLASENFPRPVILKAGAALLLPSFASPSTGGI 471
P P + FPR V+ AG ++LP + P GI
Sbjct: 297 PQGEPPKTAQFPRMVVPSAGVHVVLPEYYCPPNIGI 332
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/74 (24%), Positives = 28/74 (37%)
Frame = -3
Query: 288 TRTKTTHCSGSRPGVYCPEKTNGVYKEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRI 109
T T+ S S P PE N K T + ++ ++ P K +I
Sbjct: 1289 TTTQEASSSASVPPAIAPESANAALTSTIDKTTGAPELAQKKYKVYVGQGKNMPHKTIKI 1348
Query: 108 LREKSPAFSFRTKS 67
+ + SF+TKS
Sbjct: 1349 IVTDNQDHSFKTKS 1362
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -3
Query: 252 PGVYCPEKTNGVYKEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILREKSPAFSFRT 73
PG + VYK+ +IK L+ V+ + N P++A ++ + + +
Sbjct: 170 PGSKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDADPKRAQMLVHQIN---RLNS 226
Query: 72 KSEITKVHDAPA-PNIY 25
+ + HDA PNIY
Sbjct: 227 PNILVVNHDASTMPNIY 243
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 346 VVYVPGPGINPLASENFPRPVILKAGAALLLPSFASPST 462
V+YVP P I PL EN +I ++LLP + S +T
Sbjct: 335 VLYVPSPQIQPLWLENEDSNII--PTNSMLLPQWGSITT 371
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 246 VYCPEKTNGVYKEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILREKSPAF 85
++C + K+ +K ++S+ K E ++ IP P+ EK L E S AF
Sbjct: 130 IFCLSTSTDAAKDDLLKKFIASEEKKELINCIPIPD---DEKLTNRLHEVSEAF 180
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 496 LLKHPILILCH---RYLAKRKKGVKELHRLSVSQVVESFLKLKD 374
L IL CH +YLAKR +K+L+R+ V ++L D
Sbjct: 127 LASQMILFYCHFPDKYLAKRGGILKKLYRIPFDTVEAESVRLAD 170
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Frame = -1
Query: 494 AKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKR 315
+ P +++ PPV A + R GL G ++ +
Sbjct: 64 SNTPKSFAAPPVPTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASAA 123
Query: 314 PPAFTM--APRRELKPPTAAVPVP 249
PP+ P+ EL+PPT+A P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRP 147
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 267 CSGSRPGVYCPEKTNGVYKEKSIKY 193
C RPG+ CP +YK I Y
Sbjct: 154 CFSVRPGIPCPPSLVNIYKAIKIDY 178
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 616 PPPESRKPRAPAFTFGQKLDPLANIAKAGPGPAS 515
PP + + P + +K+DPL +I +A P P +
Sbjct: 1944 PPSVASNAKLPPASNNRKVDPLEDILQAMPPPTT 1977
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 466 HRYLAKRKKGVKELHRLSVSQVV 398
+++L +KG +ELHR +SQ++
Sbjct: 216 YQFLKDMRKGFRELHRKDLSQLI 238
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.2
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Frame = -1
Query: 488 APNTYSMPPVLGEAKEGSKRAAPAFSITGR--------GKFSE-AKGLMPGPGTYTTDRA 336
AP+T PP L ++ S AP +I GR G S + +P P +
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Query: 335 AAALTKRPPAFTM-APRRELKPPTAAVPVP 249
+ PP+ M AP PP+A + P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 295 LLDEN*NHPLQRFPSRSVLS*EDKRGLQREVHQIHSFKQNET*KG 161
LL + N +F ++++S DK+ ++R + I FKQ+ +G
Sbjct: 978 LLQKYYNESENKFDDKAIISSVDKKEMKRAMPFIQQFKQSVINRG 1022
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,543
Number of Sequences: 5004
Number of extensions: 68427
Number of successful extensions: 179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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