Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0371.Seq
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.066
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16) 33 0.27
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 31 0.82
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 31 1.1
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 31 1.4
SB_39847| Best HMM Match : Histone (HMM E-Value=1.3e-07) 29 4.4
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = -1
Query: 488 APNTYSMPPVLGEAKEGSKRAAPAFSITGR---GKFSEAKGLMPGPGTYTTDRAAAALTK 318
+PN+YS+P + G K +K +A A+S+TGR G FSE PGPGTY + K
Sbjct: 258 SPNSYSLPALTGP-KVVNKTSAAAYSLTGRSNNGGFSEDLQKTPGPGTYKV-TSPDKYRK 315
Query: 317 RPPAFTMAPRRELKPPTAAVPVP 249
R A++M R + + P P
Sbjct: 316 RMAAYSMNGRNFMPGDSTQKPGP 338
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = -3
Query: 213 KEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILREKSPAFSFRTKSEITKVHDAPAP 34
K+ + +++ S+ K + + +P P Y PEK K+P++SF ++++ + P+P
Sbjct: 200 KDGTPAFSLYSRAKEKNLSHVPGPGEYSPEKHSIPHERKAPSYSFGSRTKYAQKQITPSP 259
Query: 33 NIYS 22
N YS
Sbjct: 260 NSYS 263
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Frame = -3
Query: 252 PGVYCPEKTNGVYKEKSIKYTVSSKMKLERVDQIPAPNAY-CPE-KADRILREKS-PAFS 82
PG Y PEK + ++ K+ Y+ S+ K + P+PN+Y P +++ + S A+S
Sbjct: 223 PGEYSPEKHSIPHERKAPSYSFGSRTKYAQKQITPSPNSYSLPALTGPKVVNKTSAAAYS 282
Query: 81 FRTKSE----ITKVHDAPAPNIY---SPEKKKKK 1
+S + P P Y SP+K +K+
Sbjct: 283 LTGRSNNGGFSEDLQKTPGPGTYKVTSPDKYRKR 316
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 150 PAPNAYCPEKADRILREKSPAFSFRTKSEITKVHDAPAPNIYSPEK 13
P P P + ++ +PAFS ++++ + P P YSPEK
Sbjct: 185 PGPKYMVPSGLTQCGKDGTPAFSLYSRAKEKNLSHVPGPGEYSPEK 230
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -1
Query: 434 KRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVP 255
K PAFS+ R K + PGPG Y+ ++ + ++ P+++ R + P
Sbjct: 200 KDGTPAFSLYSRAKEKNLSHV-PGPGEYSPEKHSIPHERKAPSYSFGSRTKY-AQKQITP 257
Query: 254 VPECIVLRRQTG 219
P L TG
Sbjct: 258 SPNSYSLPALTG 269
>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 35.1 bits (77), Expect = 0.066
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -3
Query: 261 GSRPGVYCPEKTNGVYKEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILREKSPAFS 82
G P P + + + YT+ + +L + PAP Y D +++ PA+S
Sbjct: 376 GPGPAYLIPARITRTGTDGTPAYTLHDRTQLNKAFSTPAPGTYKVHNPD-YNKKRMPAYS 434
Query: 81 FRTKSEITKVHD-APAPNIYSPEK 13
++ +T + P P +SPEK
Sbjct: 435 MNGRNYMTGDNTLKPGPGAHSPEK 458
Score = 34.7 bits (76), Expect = 0.088
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 213 KEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILREKSPAFSFRTKSEITKVHDAPAP 34
K K ++ K+ L+ + P P P + R + +PA++ ++++ K PAP
Sbjct: 356 KHKKPAWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTLHDRTQLNKAFSTPAP 415
Query: 33 NIY---SPEKKKKK 1
Y +P+ KK+
Sbjct: 416 GTYKVHNPDYNKKR 429
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = -1
Query: 509 SEGMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAA 330
++ + AP TY + + +K+ PA+S+ GR + L PGPG ++ ++ +
Sbjct: 407 NKAFSTPAPGTYKV-----HNPDYNKKRMPAYSMNGRNYMTGDNTLKPGPGAHSPEKGGS 461
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 33.5 bits (73), Expect = 0.20
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Frame = -1
Query: 497 TAKAPNTYSMPPVLGEAKEG-SKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAAL- 324
T AP T P E + + + A T + + L GP T AL
Sbjct: 853 TTAAPETTVAPETTVEPETTVASKTTVASETTVTPEATATPELTAGPATTLAPTTIGALE 912
Query: 323 TKRPPAFTMAPRRELKPPTAAVPV 252
T P FTM P + P T VPV
Sbjct: 913 TTEAPEFTMVPETTMAPKTTTVPV 936
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 356 TYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVP 255
T T D A T P T+AP + P T AVP
Sbjct: 3672 TLTPDTTVAPETPMAPETTVAPETTVTPETTAVP 3705
>SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16)
Length = 97
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -1
Query: 476 YSMPPVLGEAKEGSKRAAPAFSITGR---GKFSEAKGLMPGPGTYTTDRAAAALTKRPPA 306
YSM K +K ++ ++S+TGR G FSE PGPG Y T R P
Sbjct: 27 YSMGGRTRYRKLPNKYSSASYSMTGRATTGSFSEDLAKAPGPGKYNT-TIPNTYKNRQPQ 85
Query: 305 FTMAPR 288
++M R
Sbjct: 86 YSMLGR 91
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 108 LREKSPAFSFRTKSEITKVHDAPAPNIYSP 19
L +P FSF+TK+ +HDA A NI+SP
Sbjct: 515 LDPNAPEFSFQTKAGAGSIHDAQA-NIFSP 543
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Frame = -1
Query: 497 TAKAPNTYSMPPVL---GEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAA 327
T +P T ++P G AAP ++ S P T + A
Sbjct: 1814 TTVSPETTAVPETTLSPGTTVAQDTTAAPETTVAPETTVSPETIAEPET-TVAPETTTAP 1872
Query: 326 LTKRPPAFTMAPRRELKPPTAAVP 255
+T PP TMAP+ L P T A P
Sbjct: 1873 VTTLPPDSTMAPKSTLAPETTAAP 1896
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Frame = -1
Query: 497 TAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGT-YTTDRAAAALT 321
T AP T ++P + + A T + + A G P T + AA
Sbjct: 414 TTIAPETTAVPGTMVPETTAAPATIIAPETTAAPETTMAPGTTAAPETTMAPETTAAPEA 473
Query: 320 KRPPAFTMAPRRELKPPTAAVP 255
PP +MAP+ P T P
Sbjct: 474 TAPPETSMAPKTTAAPETTMAP 495
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 356 TYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVP 255
T + A +T PP TMAP+ L P T A P
Sbjct: 62 TVAPETTTAPVTTLPPDSTMAPKSTLAPETTAAP 95
>SB_39847| Best HMM Match : Histone (HMM E-Value=1.3e-07)
Length = 407
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +1
Query: 229 LLRTIHSGTGTAAV-----GGFSSRLGAIVKAGGRFVNAAA 336
L R+ G G A++ GG + + GA+++AG FVN AA
Sbjct: 237 LARSKDGGNGQASINGTFGGGSNGKGGALIQAGSDFVNGAA 277
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 124 FRTISVRSGYLINPFKFHFA*NCV-FDGLLFVNPVCLLRTI 243
F T +SG ++NP KF FA CV F G N L T+
Sbjct: 610 FLTCVGQSGIVLNPDKFQFAEKCVDFAGFRVANYAQLRETM 650
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,161,478
Number of Sequences: 59808
Number of extensions: 516187
Number of successful extensions: 1371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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