Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0371.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   7.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 389 SEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAP--RRELKPPTAA 261
           SEAK   P PG++    AA A T+  P     P     L+PP  A
Sbjct: 296 SEAKIFPPTPGSFNFSMAALA-TEHTPLSVKFPGMGHGLQPPDLA 339


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 392 TFHDL*Y*KPVQLFYSLLSLRQVPV 466
           T H+  Y K  +L+Y+++++ Q+PV
Sbjct: 322 TIHNNNYNK--KLYYNIINIEQIPV 344


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 370  INPLASENFPRPVILKAGAALLLPSFASPSTGGIE 474
            + PL+ E   RP+I     +L LP    P    +E
Sbjct: 1050 LRPLSMEKGTRPMIPDDNTSLALPKNEGPFRLNVE 1084


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,973
Number of Sequences: 438
Number of extensions: 5221
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)