Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0371.Seq
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08670.1 68416.m01007 expressed protein 35 0.072
At1g69310.2 68414.m07949 WRKY family transcription factor contai... 31 0.67
At1g69310.1 68414.m07948 WRKY family transcription factor contai... 31 0.67
At2g27320.1 68415.m03284 hypothetical protein contains Pfam pr... 31 0.89
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 30 2.0
At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast ... 29 3.6
At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast ... 29 3.6
At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast ... 29 3.6
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P... 29 4.7
At4g30780.1 68417.m04361 expressed protein hypothetical protein ... 29 4.7
At1g68060.1 68414.m07775 expressed protein 28 6.2
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 28 8.3
At2g36950.1 68415.m04531 heavy-metal-associated domain-containin... 28 8.3
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 8.3
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 34.7 bits (76), Expect = 0.072
Identities = 24/101 (23%), Positives = 39/101 (38%)
Frame = -1
Query: 482 NTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAF 303
++Y P S R + + + S + PG + + D+A +L+ RP
Sbjct: 188 SSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTP 247
Query: 302 TMAPRRELKPPTAAVPVPECIVLRRQTGFTKRSPSNTQFQA 180
T P+ P P R + T+RSPS+T A
Sbjct: 248 TSRPQLSASSPNIIASRPN----SRPSTPTRRSPSSTSLSA 284
>At1g69310.2 68414.m07949 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 287
Score = 31.5 bits (68), Expect = 0.67
Identities = 20/79 (25%), Positives = 30/79 (37%)
Frame = -3
Query: 282 TKTTHCSGSRPGVYCPEKTNGVYKEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILR 103
T T+ CS S TN S ++ ++ P P EK R
Sbjct: 70 TVTSSCSSSAAVSVAVTSTNNNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKR 129
Query: 102 EKSPAFSFRTKSEITKVHD 46
+ P F+F TKS++ + D
Sbjct: 130 IRQPRFAFMTKSDVDNLED 148
>At1g69310.1 68414.m07948 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 287
Score = 31.5 bits (68), Expect = 0.67
Identities = 20/79 (25%), Positives = 30/79 (37%)
Frame = -3
Query: 282 TKTTHCSGSRPGVYCPEKTNGVYKEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILR 103
T T+ CS S TN S ++ ++ P P EK R
Sbjct: 70 TVTSSCSSSAAVSVAVTSTNNNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKR 129
Query: 102 EKSPAFSFRTKSEITKVHD 46
+ P F+F TKS++ + D
Sbjct: 130 IRQPRFAFMTKSDVDNLED 148
>At2g27320.1 68415.m03284 hypothetical protein contains Pfam
profile PF03080: Arabidopsis proteins of unknown
function
Length = 339
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 237 PEKTNGVYKEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILREKSPAFSF 79
P + + K I+ SS KL+R D+ YCP+ ILR+++ SF
Sbjct: 39 PAFQHPLLKHHKIQEKFSSNEKLKRKDEYQPNEKYCPKGTVPILRQRNGTESF 91
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 539 KGWTWTCFLQSEGMTAKAPNTYSMPPVLGEAKEGSKR 429
K W W+C L E K N+Y ++ A+ ++R
Sbjct: 343 KRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQR 379
>At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -1
Query: 596 TKSSSFYFRTEARSSC*YSKGWTWTCFLQSEGMTAKAPNTYSMPPVLG 453
T FY A ++ + GW W + + K PN + P VLG
Sbjct: 115 TSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVN-PLVLG 161
>At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -1
Query: 596 TKSSSFYFRTEARSSC*YSKGWTWTCFLQSEGMTAKAPNTYSMPPVLG 453
T FY A ++ + GW W + + K PN + P VLG
Sbjct: 115 TSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVN-PLVLG 161
>At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -1
Query: 596 TKSSSFYFRTEARSSC*YSKGWTWTCFLQSEGMTAKAPNTYSMPPVLG 453
T FY A ++ + GW W + + K PN + P VLG
Sbjct: 115 TSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKVVKTPNAVN-PLVLG 161
>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
SP:P25819, GI:17865693 from [Arabidopsis thaliana]
Length = 492
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -3
Query: 225 NGVYKEKSIKYTVSSKMKLERVDQIPAPNAYCPEKADRILREKSPAF 85
N +++++ + Y S ++ ++ P P A C K +R + EK F
Sbjct: 382 NFMHRDEEVNYFPSRYDQVRHAEKYPTPPAVCSGKRERCIIEKENNF 428
>At4g30780.1 68417.m04361 expressed protein hypothetical protein
F27D4.1 - Arabidopsis thaliana,PID:g4115371
Length = 589
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 232 LRTIHSGTGTAAVGGFSSRLGAIVKAGGRFVNAAAALSVVYVPGPGINPLASENFPRPVI 411
++ H G AA + LG+ +K + + AAA++ PG I L + NFP +
Sbjct: 88 MKITHCGDPKAAETLKAGALGSGLKRESKTIAAAASVGPTLAPG-SIEKLKASNFPAS-L 145
Query: 412 LKAG 423
LK G
Sbjct: 146 LKIG 149
>At1g68060.1 68414.m07775 expressed protein
Length = 622
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/90 (23%), Positives = 35/90 (38%)
Frame = -1
Query: 518 FLQSEGMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDR 339
F + ++ K P S + +K + +F G K L+ GPG Y+ ++
Sbjct: 420 FASNGFLSKKTPMRNSFTSNSTSVLKNAKGTSKSFD-GGTRSLDRGKALLKGPGNYSFNK 478
Query: 338 AAAALTKRPPAFTMAPRRELKPPTAAVPVP 249
A + T E KPP + +P P
Sbjct: 479 ACDETKESESPNTWKEDSEEKPP-SELPAP 507
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 356 TYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVP 255
T T+ AA A +K P A +LKPPT+ P
Sbjct: 517 TSVTETAAPATSKMRPLSPYAIYADLKPPTSPTP 550
>At2g36950.1 68415.m04531 heavy-metal-associated domain-containing
protein nearly identical to farnesylated protein ATFP2
[GI:4097545] Pfam profile PF00403:
Heavy-metal-associated domain
Length = 386
Score = 27.9 bits (59), Expect = 8.3
Identities = 27/97 (27%), Positives = 41/97 (42%)
Frame = -2
Query: 730 LRINTLKPVKLEFSIEERTA*FIN*WFYERG*L*ITGKPPPESRKPRAPAFTFGQKLDPL 551
L + + PVKL+ +EE+T + + PPP+ P A A G+K
Sbjct: 90 LVVGKIDPVKLQEKLEEKTKRKV-----------VLANPPPKVEGPVAAA--VGEKKADG 136
Query: 550 ANIAKAGPGPASYNQKE*LLKHPILILCHRYLAKRKK 440
+ A P PA KE ++ I + C + K KK
Sbjct: 137 GDKEAAPPAPAPAAPKESVVPLKIRLHCEGCIQKIKK 173
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.9 bits (59), Expect = 8.3
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Frame = -1
Query: 497 TAKAPNTYSMPPVLGEAKEGSK-RAAPAFSITGRGKFSEAKGLMPG--PGTYTTDRAAAA 327
TA P T + PPV S PA + T A + P P A+A
Sbjct: 49 TAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASA 108
Query: 326 LTKRPPAFTMAPRRELKPPTAAVPVP 249
T PP + P PPT A P P
Sbjct: 109 PTVSPPPVSPPPAPTSPPPTPASPPP 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,442
Number of Sequences: 28952
Number of extensions: 379514
Number of successful extensions: 938
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -