Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0368.Seq
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.99 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.3  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 485 PPPSSETPRHPGAVQAHL 538
           P  SS TPRH    Q HL
Sbjct: 424 PESSSSTPRHEWVAQNHL 441


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 179 RLHFFMPGFAPLTSRGSRQYRALTVPSSRN 268
           R    MP    +T   + QYR + + +SRN
Sbjct: 191 RDQLLMPNDVSITDEPAYQYRGIALDTSRN 220


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 389  TSKTRTPHTSWNGSPTT*RPPCATFPLV 472
            ++ TR   T+W    TT  PP    P V
Sbjct: 1069 STTTRPTTTNWPTQGTTIPPPAVVMPEV 1096


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,677
Number of Sequences: 336
Number of extensions: 3627
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)