Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0368.Seq
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 162 TWFPSRVSTSSCQVSLPSHPVEADSTV 242
           +W P  +  SSC++++   P +  S +
Sbjct: 147 SWKPPAIYKSSCEINVEYFPFDEQSCI 173


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 214 EGSETWHEEVETREGNHVYGQFSEISVQLTGEPKASGDT 98
           +GS T H E+E     H+     ++ V +   P+ S  T
Sbjct: 47  QGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRHT 85


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +3

Query: 138 LISENWP*TWFPSRVSTSSCQVSLPSHPVEADSTV 242
           LI  N    W P  +  SSC + +   P +  + +
Sbjct: 132 LIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCI 166


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 628 SASVNSISSMPSPVYQCKKALR-LNIAVN 545
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 165 WFPSRVSTSSCQVSLPSHPVEADSTV 242
           W P  V  SSC + +   P +  + V
Sbjct: 143 WQPPAVYKSSCSIDVEFFPYDVQTCV 168


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +3

Query: 165 WFPSRVSTSSCQVSLPSHPVEADSTV 242
           W P  +  SSC++ +   P +  + V
Sbjct: 143 WKPPAIYKSSCEIDVEYFPFDEQTCV 168


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +3

Query: 165 WFPSRVSTSSCQVSLPSHPVEADSTV 242
           W P  +  SSC++ +   P +  + V
Sbjct: 139 WKPPAIYKSSCEIDVEYFPFDEQTCV 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,842
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)