Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0367.Seq
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    30   0.38 
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    27   2.0  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   4.6  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   4.6  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   6.1  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   6.1  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 582  IAVLWKPDVDEYKDFQALNANALIPETVDGEKRYKVNKEAI 704
            +A  + P +DE    Q+   N L+ ET+DG  R ++N+E I
Sbjct: 2233 LAPAYSPSIDEK---QSNEPNTLLGETIDGLHRKRLNEEGI 2270


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 651 IPETVDGEKRYKVNKEAIVE 710
           +P+TV G KR KVN E +++
Sbjct: 90  LPKTVSGRKRQKVNAETLLD 109


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 209 CRHYAHAPTARVGASRLLQLCYLFT--GQIIIEVQHED 102
           C H A+APTA+V + +   L  LF   G +  E   ED
Sbjct: 409 CTHTAYAPTAQVASQQGAYLGQLFNKLGSLNFEKPSED 446


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 440 RGGAHTRPPTRGPGWGAARSARRTPT 363
           RGG   R P RGP   A+++ +  PT
Sbjct: 249 RGGRPNRAPRRGPSETASKTQQAPPT 274


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 578 GYRCLVEARRRRVQRFPGSERERFNTGDSGRREEIQSEQRSY 703
           G  C ++ RR+ V +   S+ ER+N+     R++ + ++R Y
Sbjct: 194 GKACDLDPRRKNVVKL--SDGERYNSLQEASRKQSERDRRQY 233


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 624 FQALNANALIPETVDGEKRYKVNKEAI 704
           F  LN  ++IP    G  RY++NK  I
Sbjct: 446 FLHLNQQSIIPRRGRGSSRYEINKNFI 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,374
Number of Sequences: 5004
Number of extensions: 46124
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)