Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0367.Seq
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58619| Best HMM Match : OKR_DC_1_C (HMM E-Value=5.9) 53 2e-07
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_34242| Best HMM Match : DnaJ (HMM E-Value=9.2e-30) 31 0.92
SB_11933| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 2.8
SB_40748| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 28 6.5
SB_43400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_55884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_13769| Best HMM Match : DUF1542 (HMM E-Value=1.1) 28 8.6
>SB_58619| Best HMM Match : OKR_DC_1_C (HMM E-Value=5.9)
Length = 289
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = +3
Query: 510 YLDDLRSAYGDFAVFFHDLYGGEVIAVLWKPDVDEYKDFQALNA--NALIPETVDGEKR 680
YL +LR A+ D A+FFHD +GG++IAVLW+P+ F+ L+A A + E++ K+
Sbjct: 187 YLRELREAFSDIALFFHDPHGGDMIAVLWRPNALSPALFKVLHAEYKAPVKESLTSSKK 245
>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 352 RTESVGVRRADRAAPQPGPRVGGRVCAPPRRRAPT 456
+T G + DR P P GGR C PP + T
Sbjct: 129 KTCGTGTQTRDRLCTNPSPAFGGRYCEPPNSKKQT 163
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 31.1 bits (67), Expect = 0.92
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 382 DRAAPQPGPRVG----GRVCAPPRRRAPTPHVGDELIPVVDFHP 501
DRAA PGP+ R+ P R P PH +++ PV P
Sbjct: 227 DRAASGPGPKPAVKPRDRLATAPPGRPPAPHTREKIAPVPSSKP 270
>SB_34242| Best HMM Match : DnaJ (HMM E-Value=9.2e-30)
Length = 238
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 359 SLXEYDVQIVLHPNLVPEWADGCAHPRAA-GPPRRTWGTSSYRSWT 493
S +YD +++ +L PE H RAA GPPRRT + WT
Sbjct: 129 SRKQYDRGLIVEGSLAPE------HARAAHGPPRRTGSIYDFDEWT 168
>SB_11933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 359 SLXEYDVQIVLHPNLVPEWADGCAHPRAA-GPPRRTWGTSSYRSWT 493
S +YD +++ +L PE H RAA GPPRRT + WT
Sbjct: 129 SRKQYDRGLIVEGSLAPE------HARAAHGPPRRTGSIYDFDEWT 168
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 367 GVRRADRAAPQPGPRVGGRVCAPPRRRAPTPHVGD 471
GVR R+ P P +GG+ C P + GD
Sbjct: 1504 GVRSRSRSCTAPAPELGGKPCVGPTEQTMACDYGD 1538
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = -3
Query: 503 TGWKSTTGMSSSPTCGVGARRRGGAHTRPPTRGPGWGAARSARRTPTDSVRTWEADC 333
T W T S S CG G R R T PP G R SV+ + ADC
Sbjct: 550 TPWTPWTECSKS--CGPGIRTRERTCTNPPPSSGGLDCLRFGNY--AQSVQCYVADC 602
>SB_40748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -1
Query: 649 KAFAFRAWKSLYSSTSGFHKTA-----ITSPPYRSWKNTAKS 539
KAF F + ++ S SG TA I PP+ SW+N+ ++
Sbjct: 10 KAFPFLSQRAAGGSASGIPLTAQSAYSIAHPPFASWRNSEEA 51
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 510 IEHGMEVHD-RYELVPHVRRGGPAARGCAHPSAHSGTRLG 394
I HG+ H R+ L H R G A +AH+ TRLG
Sbjct: 1443 IRHGLARHTIRHGLAEHTTRLGTAQNTTRLSTAHNTTRLG 1482
>SB_43400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +3
Query: 609 DEYKDFQALNANALIP---ETVDGEKRYKV 689
+E +D +AL NAL+P E +D ++RY++
Sbjct: 113 EEIRDLEALRGNALLPEMMEMLDPDQRYRL 142
>SB_55884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3
Query: 551 HSEVTVGAPQVIQVLSTGWKSTTGMSSSPTCGVGARRRGGAHTRPPTRGPG 399
+++ VG +Q + K T ++ T VGA G HTR T PG
Sbjct: 152 NTQSVVGYNDKLQKATDSMKLGTNAINAETKPVGAHNMAGCHTRLTTCRPG 202
>SB_13769| Best HMM Match : DUF1542 (HMM E-Value=1.1)
Length = 369
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 322 IEQAVLEVGEGAR--GQRLRPAERRCGGPGLHASPTSRSCAVTMHTLRPRG-SARAACSN 152
I++ V +G R GQR RP R+ PT R+ +RP G R+ C N
Sbjct: 261 IKEQVKNENKGPRPTGQRRRPTGRKTRPTSQGRRPTGRTSIEERDAVRPSGRRPRSTCRN 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,724,949
Number of Sequences: 59808
Number of extensions: 428292
Number of successful extensions: 5060
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5060
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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