Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0367.Seq
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical... 33 0.20
Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical pr... 30 0.22
Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical pr... 30 0.22
U10401-9|AAA19054.4| 771|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 31 1.1
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 30 1.9
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 30 1.9
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 30 1.9
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 30 1.9
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 29 2.5
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL034393-27|CAH19090.1| 710|Caenorhabditis elegans Hypothetical... 28 5.7
AL008866-2|CAA15508.2| 710|Caenorhabditis elegans Hypothetical ... 28 5.7
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 28 5.7
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 28 7.6
>AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical
protein Y51H7C.11 protein.
Length = 1058
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 522 LRSAYGDFAVFFHDLYGGEVIAVLWKPDVDE 614
L +++ A+FF++ YGG I V++KP DE
Sbjct: 982 LNNSFQQVAMFFYNKYGGHHIGVMFKPQEDE 1012
>Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 29.9 bits (64), Expect(2) = 0.22
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +1
Query: 367 GVRRADRAAPQPGPRVGGRVCAPPRRRAPTP 459
G AD P PG R G V P RRAP P
Sbjct: 389 GCEDADCGGPCPGARGGASVPQQPPRRAPEP 419
Score = 21.8 bits (44), Expect(2) = 0.22
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 241 PGLRTGAPQGAGAGRE 288
PG+ GAP AG G E
Sbjct: 376 PGMFGGAPPSAGGGCE 391
>Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 29.9 bits (64), Expect(2) = 0.22
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +1
Query: 367 GVRRADRAAPQPGPRVGGRVCAPPRRRAPTP 459
G AD P PG R G V P RRAP P
Sbjct: 389 GCEDADCGGPCPGARGGASVPQQPPRRAPEP 419
Score = 21.8 bits (44), Expect(2) = 0.22
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 241 PGLRTGAPQGAGAGRE 288
PG+ GAP AG G E
Sbjct: 376 PGMFGGAPPSAGGGCE 391
>U10401-9|AAA19054.4| 771|Caenorhabditis elegans Hypothetical
protein T20B12.1 protein.
Length = 771
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 111 LDFNDDLTREQITELEQAARADPRGRSVC 197
LD NDD EQ+ EQ AR D R + C
Sbjct: 232 LDMNDDTLLEQVAITEQGARVDGRTLNAC 260
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 497 WKSTTGMSSSPTCGVGARRR 438
WK+TT S S TCG G RRR
Sbjct: 1697 WKTTTWSSCSVTCGRGIRRR 1716
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 497 WKSTTGMSSSPTCGVGARRR 438
WK+TT S S TCG G RRR
Sbjct: 1697 WKTTTWSSCSVTCGRGIRRR 1716
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 590 LVEARRRRVQRFPGSERERFNTGDSGRREEIQSEQRS 700
L E R++ ++ S ER NTG S RREE RS
Sbjct: 535 LEEETRKKAEKISESLSERKNTGRSDRREEAPKGARS 571
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 590 LVEARRRRVQRFPGSERERFNTGDSGRREEIQSEQRS 700
L E R++ ++ S ER NTG S RREE RS
Sbjct: 621 LEEETRKKAEKISESLSERKNTGRSDRREEAPKGARS 657
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 590 LVEARRRRVQRFPGSERERFNTGDSGRREEIQSEQRS 700
L E R++ ++ S ER NTG S RREE RS
Sbjct: 623 LEEETRKKAEKISESLSERKNTGRSDRREEAPKGARS 659
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 590 LVEARRRRVQRFPGSERERFNTGDSGRREEIQSEQRS 700
L E R++ ++ S ER NTG S RREE RS
Sbjct: 621 LEEETRKKAEKISESLSERKNTGRSDRREEAPKGARS 657
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 5 VPPPPTLHAPHSTHHRPVPGAKAAGC 82
VPPPP + P T RP P K A C
Sbjct: 203 VPPPPRQNIPPPTPRRPPPKKKNACC 228
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 231 RVPPRAPVPSLCTRSDRAGRREP 163
R P RAP PS +R R+ RR P
Sbjct: 385 RAPSRAPAPSSTSRETRSTRRSP 407
>AL034393-27|CAH19090.1| 710|Caenorhabditis elegans Hypothetical
protein B0019.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +1
Query: 349 VRTESVGVRRADRAAPQPGPRVGGRVCAPPRRRAPTPHVG------DELIPV 486
+RT G+ R D P P R PR+ AP HV +EL+PV
Sbjct: 504 LRTLGFGLTRNDLPGPSPPISTSRRSRGRPRKSAPEAHVAPITEKLEELLPV 555
>AL008866-2|CAA15508.2| 710|Caenorhabditis elegans Hypothetical
protein B0019.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +1
Query: 349 VRTESVGVRRADRAAPQPGPRVGGRVCAPPRRRAPTPHVG------DELIPV 486
+RT G+ R D P P R PR+ AP HV +EL+PV
Sbjct: 504 LRTLGFGLTRNDLPGPSPPISTSRRSRGRPRKSAPEAHVAPITEKLEELLPV 555
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 391 APQPGPRVGGRVCAPPRRRAPTPHVG 468
AP P P GG PP AP P G
Sbjct: 41 APPPAPACGGGAPPPPAYAAPAPSYG 66
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +1
Query: 217 ARWDSRASPGLRTGAPQGAGAGRERPR--LPREXXXXXXXXXXXXHVRTESVGVRRADRA 390
AR SP R P+GA A R+RP P R + G R+ RA
Sbjct: 59 ARGGRSRSPIRRGSPPRGARADRDRPMRPSPSPPRRRRPSPSPPRRDRRDRSGSRQRRRA 118
Query: 391 APQPGPRVGGRVCAPPRR 444
+P+ P R +P +R
Sbjct: 119 SPRRSP--AARSASPAKR 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,573
Number of Sequences: 27780
Number of extensions: 303982
Number of successful extensions: 1275
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -