Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0367.Seq
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 69   RLLAATDWTSEVFVLDFNDDLTREQITELEQAAR 170
            +L + ++W + + +  + +   R  +T LE AAR
Sbjct: 923  QLTSVSEWLASIKMSRYAESFERSGVTTLEAAAR 956


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 643 FAFRAWKSLYSSTSGFHKTAITSP 572
           F FRAW+S+     G   T  T P
Sbjct: 304 FLFRAWESIIVGMIGAFITCFTMP 327


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 427  CAPPRRRAPTPHVG 468
            CAP RR  P P +G
Sbjct: 1695 CAPNRRCPPPPRMG 1708


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,116
Number of Sequences: 438
Number of extensions: 3721
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)