Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0367.Seq
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    30   1.3  
At1g69650.1 68414.m08015 meprin and TRAF homology domain-contain...    30   1.7  
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein...    30   1.7  
At1g49270.1 68414.m05524 protein kinase family protein contains ...    29   2.3  
At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai...    29   3.0  
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai...    29   3.0  
At5g37990.1 68418.m04575 S-adenosyl-L-methionine:carboxyl methyl...    29   4.0  
At3g25170.1 68416.m03143 rapid alkalinization factor (RALF) fami...    29   4.0  
At5g63540.1 68418.m07975 expressed protein  ; expression support...    27   9.3  
At1g07135.1 68414.m00759 glycine-rich protein                          27   9.3  

>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 518 IQVLSTGWKSTTGMSSSPTCGVGARRRGGAHTRPPTRGPGWGAARS 381
           + V+S    S  G +S+ T G G+   GG    PP+ G G G+  S
Sbjct: 382 LYVISNSGGSGNGTNSTSTSGGGSPSPGGGSGSPPSTGGGSGSPPS 427


>At1g69650.1 68414.m08015 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 294

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +2

Query: 368 EYDVQIVLHPNLVPEWADGCAHPRAAGPPRRTWGTSSYRSWTSIPCSIP 514
           E+ V +++ P L   W     H      P+ TW   ++  W    CS P
Sbjct: 130 EFGVDVIVAPPLT-NWEILSFHDEKLSYPKVTWSVKNFSQWKENECSKP 177


>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
           Nrap family protein contains Pfam profile PF03813: Nrap
           protein; similar to nucleolar RNA-associated protein
           alpha (GI:18539461) [Mus musculus]
          Length = 1053

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 51  GLFRVLRLLAATDWTSEVFVLDFNDDLTREQITELEQAARADPRG 185
           G  R LRLLA  +W     ++D N+D  R    E+     +  +G
Sbjct: 791 GFLRFLRLLADYEWMFYPLIVDINNDFGRNDEKEINDNFMSSRKG 835


>At1g49270.1 68414.m05524 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 699

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 8   PPPPTLHAPHSTHHRP---VPGAKAAGCNRLDERGLRAG 115
           PPPP+  + HS+H +P    P    +G N     GL  G
Sbjct: 136 PPPPSKTSDHSSHSQPRSLAPPTSNSGSNSSSNDGLNIG 174


>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 460

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 373 RRADRAAPQPGPRVGGRVCAPPRRRAPTPHVGDELIPVVDFHPVLNT 513
           RR      Q  PR  GRV   PR R+P  + G  + P  D  P  +T
Sbjct: 233 RRFGPPRDQSPPRNAGRVTGSPRDRSPPRNAGRRMGPPRDQSPPRST 279


>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 456

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 373 RRADRAAPQPGPRVGGRVCAPPRRRAPTPHVGDELIPVVDFHPVLNT 513
           RR      Q  PR  GRV   PR R+P  + G  + P  D  P  +T
Sbjct: 233 RRFGPPRDQSPPRNAGRVTGSPRDRSPPRNAGRRMGPPRDQSPPRST 279


>At5g37990.1 68418.m04575 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292], caffeine synthase [Camellia
           sinensis][GI:9967143], SAM:jasmonic acid carboxyl
           methyltransferase [GI:13676829]
          Length = 362

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 341 LPMFVPSLXEYDVQIVLHPNLVPEWADGCAHPRAAGPPRRTWGTSSYRS 487
           LP+++P + E+  +I  + N   E  +  +HP    P    + TS +R+
Sbjct: 265 LPIYIPHISEFKAEIERNENFSIETMEKISHPMDYKPLTNDFITSMFRA 313


>At3g25170.1 68416.m03143 rapid alkalinization factor (RALF) family
           protein
          Length = 76

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 2   RVPPPPTLHAPHSTHHRP-VPGAK-AAGCNRL 91
           R P PP    PH++HH+P VP    + GC+R+
Sbjct: 38  RGPNPPAGCHPHNSHHKPRVPVHNYSRGCSRI 69


>At5g63540.1 68418.m07975 expressed protein  ; expression supported
           by MPSS
          Length = 602

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 602 RRRRVQ-RFPGSERERFNTGDSGRREEIQS 688
           RRRR+Q R+   E E   TG SG  + +QS
Sbjct: 2   RRRRLQLRYSSDEEEEDETGTSGVGDSVQS 31


>At1g07135.1 68414.m00759 glycine-rich protein 
          Length = 155

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = -3

Query: 599 LPQDSDNLAAVQVVEEHSEVTVGAPQVIQVLSTGWKSTTGMSSSPTCGVGARRRGGAHTR 420
           LP  S   ++V    E    +V  P V+       +    +      G G R  GGA + 
Sbjct: 22  LPSVSSRPSSVDTNHETLPFSVSKPDVVVFEGKARELAVVIKKGGGGGGGGRGGGGARSG 81

Query: 419 PPTRGPGWGAARSARR 372
             +RG G G++ S  R
Sbjct: 82  GRSRGGGGGSSSSRSR 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,241
Number of Sequences: 28952
Number of extensions: 292192
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)