Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0364.Seq
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   1.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.3  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.3  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   8.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.3  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 234 CRL-LAWFGTFIYYNIFKITGFFWILTAVIFRFIN 335
           C L  +W+   ++Y+   I+G  ++ T   +R +N
Sbjct: 220 CNLTFSWYSKKVFYSKIIISGSIFMTTTSFYRILN 254


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 549 VKPIRRNFLKENFQNCFYQEFVTRHII 469
           VK  R   L E       +E+VTRH+I
Sbjct: 232 VKVFRPEPLCERLFEASREEYVTRHLI 258


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 323 PIYKWYTYQFQQYRSKYLSRRH 388
           P+Y W   QF++ R +    R+
Sbjct: 231 PLYPWMRSQFERKRGRQTYTRY 252


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 66  LMLLGAGPLMFWYYIGR 116
           L +   G  MF YYIGR
Sbjct: 134 LWISSVGVRMFQYYIGR 150


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 246 AWFGTFIYYNIFKITGFFWILTAV 317
           AW    + YN+ +I+  F+ L A+
Sbjct: 48  AWICALVNYNVSEISENFYYLPAM 71


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 323 PIYKWYTYQFQQYRSKYLSRRH 388
           P+Y W   QF++ R +    R+
Sbjct: 233 PLYPWMRSQFERKRGRQTYTRY 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,581
Number of Sequences: 336
Number of extensions: 4115
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)