Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0364.Seq
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    32   0.11 
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   5.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   5.2  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   9.2  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
 Frame = +3

Query: 183 LCPC-----CLVSMKR-QGT*GLCRLLAWFGTFIYYNIFKITGFFWI 305
           L PC     C V M R + + G  R+  WF    YY I+   G  WI
Sbjct: 109 LAPCFVLLWCAVPMPRYEDSQGTVRIRFWFFLIFYYGIYNAVGLLWI 155


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 540 IRRNFLKENFQNCFYQEFVTRHIISLF 460
           +  + + ENF N     F TRH++S F
Sbjct: 307 VAESLVSENFANIGNSTFPTRHVLSYF 333


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 549 VKPIRRNFLKENFQNC 502
           VKP R  FL +NF NC
Sbjct: 199 VKPFRNYFLLKNFDNC 214


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 219 LGASLKRGNKGIKRFKRINKYKIGAIFERPGLANSALYNTKTLKDLHLKA-SIPALLTE 46
           + +S  +  KG++  + I KYK+   FE      +ALY     ++  LKA +I  +L+E
Sbjct: 491 VASSNLKSTKGLRETRLIQKYKVKGDFE---YVYAALYYAAFTQESTLKAVTIDDILSE 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,379
Number of Sequences: 5004
Number of extensions: 63217
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)