Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0364.Seq
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    29   5.4  
01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898     29   5.4  

>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 177 IFLCPCCLVSMKRQGT*GLCRLLAWFGTFIYYNIFK 284
           +++  C LV    Q    +CR L+WF    YY   K
Sbjct: 511 LYILACNLVKDYPQNCGSICRALSWFAVGCYYYCIK 546


>01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898
          Length = 632

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 238 AYWPGLELSYITIYSKLPA 294
           AYWP + + YIT+ ++LPA
Sbjct: 84  AYWPSVIIRYITVGNELPA 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,077,220
Number of Sequences: 37544
Number of extensions: 365626
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)