Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0364.Seq
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.5  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)                   28   9.7  

>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 929

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 272 QYIQNYRLLLDTDGSNFPIYKWYTYQFQQYRSKYLSRRHLP 394
           Q++++YR+    DG  + IYK  T++    R   +S R  P
Sbjct: 455 QWVKSYRIKYSADGKRWHIYKSMTFRGNYDRMSIVSYRLSP 495


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 126  LANSALYNTKTLKDLHLKASIPALLTETTGVIRNVPTYMSNK 1
            ++ S + NTK + D H+K  I A  + TT +  + PT  +NK
Sbjct: 1588 ISYSCMNNTKQIIDNHIKRIITA--SSTTEIASSAPTTTNNK 1627


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -3

Query: 261 KFQTRPIGDRDLMSLGASLKRGNKGIKRFKRINKYKIGAIFERPGLANSALYNTKTLKDL 82
           K +  PIGD + +SL  ++    K ++    + ++    + E PG+ N +    + L+D 
Sbjct: 589 KIKNNPIGDMESVSLVYTMLE--KVVRECSYVRQFLKDTLPELPGVRNKSDMKVQALRDF 646

Query: 81  HLKASI 64
            L+  +
Sbjct: 647 ELRGIV 652


>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
          Length = 690

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 222 SLGASLKRGNKGIKRFKRINKYKIGAIFERPGLANSALYNTKTLKDL---HLKASIPALL 52
           S+ ASL+  N+       I++ +  +      LAN  +Y TKT K L   +++  +  L+
Sbjct: 307 SINASLRPDNRPASFINAISRCEQISTLSPEALANRTIYLTKTTKLLRGKYMRKGLSTLV 366

Query: 51  TETTGVIR 28
            E    IR
Sbjct: 367 AERMAFIR 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,617,837
Number of Sequences: 59808
Number of extensions: 436398
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)