Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0364.Seq
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical ...    29   2.8  
AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical
           protein C27A12.2 protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 218 RDMRSLSPIGLVWNFHILQYIQNYRLLLDTDGSNFPIYKWYTYQFQQ 358
           +++  L   G   NF+  Q +QN  +L D +G   PIY++Y  Q+ Q
Sbjct: 217 KEIPKLKNPGFSINFNYFQ-VQNGLILQDFNGEPEPIYEFYEEQYVQ 262


>AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.5 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 279 FKITGFFWI---LTAVIFRFINGILISFSSI 362
           F I  F+WI   + AVIF+FI  IL+  S++
Sbjct: 219 FGIDDFYWIVYYIYAVIFQFIPSILLPISTV 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,026,525
Number of Sequences: 27780
Number of extensions: 344749
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)