Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0364.Seq
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   7.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 136 LEYSSDFVFVYSLKSFY 186
           L Y++DF+   SL SFY
Sbjct: 337 LFYNTDFIIYSSLSSFY 353



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 261 FIYYNIFK 284
           F+YYNIFK
Sbjct: 361 FLYYNIFK 368


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 242 IGLVWNFHILQYI 280
           IG+V  FHILQ+I
Sbjct: 480 IGIVNQFHILQFI 492


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 217 KGHEVSVAYW 246
           KGH++S  YW
Sbjct: 540 KGHDISADYW 549


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 702 TEMDKF*NPWI*MLEF 655
           TE   F NPW   LEF
Sbjct: 389 TEWSSFINPWTKKLEF 404


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 702 TEMDKF*NPWI*MLEF 655
           TE   F NPW   LEF
Sbjct: 95  TEWSSFINPWTKKLEF 110


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 484 YKFLVKTILKIFFQKIPPNR 543
           + F+V TIL  F  KI P R
Sbjct: 396 WSFIVSTILLWFINKIIPIR 415


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 323 PIYKWYTYQFQQYRSKYLSRRH 388
           P+Y W   QF++ R +    R+
Sbjct: 259 PLYPWMRSQFERKRGRQTYTRY 280


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 761 WKEAERSNVSVHDI*PRV 708
           WK A R N+S+H    RV
Sbjct: 548 WKNAVRHNLSLHKCFMRV 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,668
Number of Sequences: 438
Number of extensions: 4341
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)