Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0364.Seq
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26530.1 68414.m03233 expressed protein  contains Pfam profil...    29   3.4  
At1g73070.1 68414.m08449 leucine-rich repeat family protein cont...    29   4.5  
At1g18140.1 68414.m02250 laccase family protein / diphenol oxida...    28   7.9  

>At1g26530.1 68414.m03233 expressed protein  contains Pfam profile:
           PF04900 protein of unknown function, DUF652; expression
           supported by MPSS
          Length = 189

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +2

Query: 209 EAPRDMRSLSPIGLVWNFHILQYIQNYRLLLDTDGSNFPIYKWYTYQFQQYR 364
           E PR++ S+ P GL ++ H    +  YR+L+DT+  NF I        Q+YR
Sbjct: 39  ELPRNVPSV-PSGLFFS-HNSSLVPPYRVLVDTNFINFSIQNKLEKLGQKYR 88


>At1g73070.1 68414.m08449 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to receptor-like
           protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 598

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 644 DVGLNSNI*IQGF*NLSISVIIP*VICHGQKRCFFLPLSNRL 769
           ++GLNSN+ I  F   + +  IP  +CHG+    F   SNRL
Sbjct: 428 NLGLNSNLEIIDFIGNNFTGEIPRNLCHGKMLTVFNLGSNRL 469


>At1g18140.1 68414.m02250 laccase family protein / diphenol oxidase
           family protein similar to high-pI laccase (LAC2-1)
           GI:1621460 from [Liriodendron tulipifera]
          Length = 581

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 418 LRFLRLPLMLKRTYK**DYMPGYKFLVKTILKIFFQKIPPNRFDFPPKSP 567
           + F+R P+ +  +Y        YK   K +  + F + PPNRFDF    P
Sbjct: 404 ISFVRPPISILESY--------YKKQSKGVFSLDFPEKPPNRFDFTGVDP 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,907
Number of Sequences: 28952
Number of extensions: 314955
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)