Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0363.Seq
         (786 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015A7BA3 Cluster: Transmembrane channel-like prote...    35   2.7  
UniRef50_Q4RXA9 Cluster: Chromosome 11 SCAF14979, whole genome s...    33   6.1  
UniRef50_A2F8A9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_Q7RL63 Cluster: Putative uncharacterized protein PY0268...    33   8.1  

>UniRef50_UPI00015A7BA3 Cluster: Transmembrane channel-like protein
           3.; n=1; Danio rerio|Rep: Transmembrane channel-like
           protein 3. - Danio rerio
          Length = 655

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +3

Query: 93  SNSKNVCHSNSIKNAVQEITKKKKNNTLSLFVYLNLILATITV 221
           + SK     NSI+ A+ E  +KKK+ +L +F+++  ILA I V
Sbjct: 251 AESKGAAIVNSIREAIVEEQEKKKDTSLQVFLFILRILANILV 293


>UniRef50_Q4RXA9 Cluster: Chromosome 11 SCAF14979, whole genome
            shotgun sequence; n=2; Euteleostomi|Rep: Chromosome 11
            SCAF14979, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1387

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -2

Query: 464  TEWKKRLYLICTRQFKGFISLIVHN*LPI*KKREKIPV 351
            T+WKK   L+C RQF    +LI H  L    +R+K PV
Sbjct: 1327 TDWKKMACLLCRRQFPNKDALIRHQQLSDLHRRKKEPV 1364


>UniRef50_A2F8A9 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 1348

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 60   KREHSKHR*YFSNSKNVCHSNSIKNAVQEITKKKKNNTLS 179
            K+  SKHR Y  + KN+  +N+IK   + I K+KKN+  S
Sbjct: 1133 KKRRSKHRSYDEDEKNLQRNNNIKRR-KSIDKEKKNSLAS 1171


>UniRef50_Q7RL63 Cluster: Putative uncharacterized protein PY02683;
           n=5; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY02683 - Plasmodium yoelii yoelii
          Length = 802

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 60  KREHSKHR*YFSNSKNVCHSNSI-KNAVQEITKKKKNNTLSLFVYLNLILATITVFEKF 233
           K E  K+  YF+      H+N + K +  +  KKKK N  ++  Y+N++    T   K+
Sbjct: 438 KNEKKKNYGYFNTDCQTSHNNRVLKTSFGKYQKKKKKNINTIAYYINVVKKHXTNINKY 496


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,746,968
Number of Sequences: 1657284
Number of extensions: 14093986
Number of successful extensions: 29789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29779
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)