Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0363.Seq
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   1.7  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   4.0  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 120 NSIKNAVQEITKKKKNNTLSLF---VYLNLILATITVFEKFG 236
           N+ K     I  +K+N+TLSLF   +YLN + + I + E+ G
Sbjct: 719 NAEKLQKMAIIAEKRNDTLSLFQNSLYLNEVESRINILEQAG 760


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 162 KNNTLSLFVYLNLILATITVFEKFGSVNNN*KKFNLRALIQILCS 296
           KNN L +F+YL LI   I  F  +GS     +KF++   I +L S
Sbjct: 75  KNNPLVVFLYLALITIGIASFFIYGSSLT--QKFSIIDWISVLTS 117


>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
 Frame = +3

Query: 45  TLANVKREHSKHR*YFSNSKNVCHSNSIKN--------AVQEITKKKKNNTLSLFVYLNL 200
           T  N    H K      NS  V  SN++++         + +  KKK+NNT+S    +  
Sbjct: 18  TCKNQSTVHQKVNKSLGNSNKVLRSNAVQSDKANREPRRITKSVKKKENNTISAVKKVIT 77

Query: 201 ILATITVFEKFGSVNNN*KKF 263
             + I    K G+   N +KF
Sbjct: 78  TESRIEGESKNGNSRKNTRKF 98


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 96  NSKNVCHSNSIKNAVQEITKKKK 164
           NSKN  ++N+++N  ++I K+KK
Sbjct: 580 NSKNENYNNALRNRKRDIEKRKK 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,351
Number of Sequences: 5004
Number of extensions: 64014
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)