Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0363.Seq
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 489 SCFNVNRLYRME--KKALSNLYTSV*RFYFSDSS*LITYIKKTGKNSSVL 346
           +CF     Y  E  K ALS   + V RF +  +S L  Y++KTGK  +V+
Sbjct: 292 NCFVGCDFYNSEELKTALSEQDSIVLRFAYLKTSALADYVQKTGKPQNVV 341


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 KKFNLRALIQILCSFNCTRR*SDALPAN 338
           +K  LRA  Q  C FNC R+ ++  P N
Sbjct: 271 EKAKLRAFSQAHCKFNCHRKCAEKAPKN 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,403,003
Number of Sequences: 59808
Number of extensions: 430179
Number of successful extensions: 803
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)