Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0363.Seq
         (786 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132679-1|AAI32680.1| 1100|Homo sapiens transmembrane channel-l...    31   4.7  
AY263163-1|AAP78778.1| 1129|Homo sapiens TMC3 protein protein.         31   4.7  
AY236490-1|AAP69868.1|  724|Homo sapiens transmembrane channel-l...    31   4.7  

>BC132679-1|AAI32680.1| 1100|Homo sapiens transmembrane channel-like
           3 protein.
          Length = 1100

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 93  SNSKNVCHSNSIKNAVQEITKKKKNNTLSLFVYLNLILATITVFEKFGSV 242
           + SK     NSI+ A+ E  +KKK+  L++ + L +I   + +    GS+
Sbjct: 285 AESKTAAIVNSIREAILEEQEKKKSKNLAVTICLRIIANILVLLSLAGSI 334


>AY263163-1|AAP78778.1| 1129|Homo sapiens TMC3 protein protein.
          Length = 1129

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 93  SNSKNVCHSNSIKNAVQEITKKKKNNTLSLFVYLNLILATITVFEKFGSV 242
           + SK     NSI+ A+ E  +KKK+  L++ + L +I   + +    GS+
Sbjct: 284 AESKTAAIVNSIREAILEEQEKKKSKNLAVTICLRIIANILVLLSLAGSI 333


>AY236490-1|AAP69868.1|  724|Homo sapiens transmembrane channel-like
           protein 3 protein.
          Length = 724

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 93  SNSKNVCHSNSIKNAVQEITKKKKNNTLSLFVYLNLILATITVFEKFGSV 242
           + SK     NSI+ A+ E  +KKK+  L++ + L +I   + +    GS+
Sbjct: 285 AESKTAAIVNSIREAILEEQEKKKSKNLAVTICLRIIANILVLLSLAGSI 334


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,496,235
Number of Sequences: 237096
Number of extensions: 1999309
Number of successful extensions: 3169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3169
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)