Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0363.Seq
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-9|AAC17520.2|  646|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z36238-10|CAL63999.1|  287|Caenorhabditis elegans Hypothetical p...    28   8.7  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    28   8.7  
AF443190-1|AAL60200.1|  287|Caenorhabditis elegans X-box binding...    28   8.7  
AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AF067216-9|AAC17520.2|  646|Caenorhabditis elegans Hypothetical
           protein C35E7.4 protein.
          Length = 646

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -3

Query: 580 PSLTPLISKYGPITFRYDNENLFQFVLGINVMF*---CQSFVQNGKKGFI*FVHVSLK 416
           P +  +I+K G +  R  +    +F L   ++F    C+++VQN KK  +  +H ++K
Sbjct: 432 PPILLMINKIGELVIRVFHFKSSRFTLVRPLVFLKKECETYVQNSKKELVLVLHKAMK 489


>Z36238-10|CAL63999.1|  287|Caenorhabditis elegans Hypothetical
           protein R74.3b protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = +3

Query: 90  FSNSKNVCHSNSIKNAVQEITKKKKNNTLSLFVYLNLILATITVFEKFGSVNNN*KKFNL 269
           +  +++   +N+I N ++ +  KK NNT+S+ +YL +I       ++   ++ + K  N+
Sbjct: 183 WEQARSTSINNNISNQLRRMDSKK-NNTISVDMYLTIISILCNHMDRNKKMDTSNKSSNI 241


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 547 GHIYLLMELVMGDLGSLTQRCVIINSFL 630
           G I+L+M LV   LGS    C+++ S L
Sbjct: 103 GFIFLIMMLVESSLGSFLLSCIVLLSLL 130


>AF443190-1|AAL60200.1|  287|Caenorhabditis elegans X-box binding
           protein unprocessedisoform protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = +3

Query: 90  FSNSKNVCHSNSIKNAVQEITKKKKNNTLSLFVYLNLILATITVFEKFGSVNNN*KKFNL 269
           +  +++   +N+I N ++ +  KK NNT+S+ +YL +I       ++   ++ + K  N+
Sbjct: 183 WEQARSTSINNNISNQLRRMDSKK-NNTISVDMYLTIISILCNHMDRNKKMDTSNKSSNI 241


>AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical
           protein K11D12.6 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = +3

Query: 627 SLNTQQRVVRSQKLVLVHNQRRYCTFTGGR 716
           SL ++++V + ++LV  + +++Y TF GG+
Sbjct: 125 SLESRKKVDQDRELVCPNGKKKYATFRGGK 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,419
Number of Sequences: 27780
Number of extensions: 350924
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)