Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0363.Seq
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04220.2 68418.m00411 C2 domain-containing protein (sytC) GC ...    29   3.5  
At5g04220.1 68418.m00410 C2 domain-containing protein (sytC) GC ...    29   3.5  
At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99...    29   4.6  
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99...    29   4.6  
At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99...    29   4.6  
At2g26110.1 68415.m03133 expressed protein                             28   6.1  
At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    28   8.1  
At2g39190.2 68415.m04814 ABC1 family protein contains Pfam domai...    28   8.1  

>At5g04220.2 68418.m00411 C2 domain-containing protein (sytC) GC
           donor splice site at exon 3; similar to Ca2+-dependent
           lipid-binding protein (CLB1) GI:2789434 from
           [Lycopersicon esculentum]
          Length = 540

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 511 GRGFHCRIER*LGHIYLLMELVMGDLGSLTQRCVIINS 624
           G GFH R +  LGH+ + ++ V+ D G + Q+  +INS
Sbjct: 490 GTGFHFRSKEELGHVDINLDDVV-DNGRINQKYHLINS 526


>At5g04220.1 68418.m00410 C2 domain-containing protein (sytC) GC
           donor splice site at exon 3; similar to Ca2+-dependent
           lipid-binding protein (CLB1) GI:2789434 from
           [Lycopersicon esculentum]
          Length = 318

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 511 GRGFHCRIER*LGHIYLLMELVMGDLGSLTQRCVIINS 624
           G GFH R +  LGH+ + ++ V+ D G + Q+  +INS
Sbjct: 268 GTGFHFRSKEELGHVDINLDDVV-DNGRINQKYHLINS 304


>At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 433

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 283 KYCVLLIVLEGKVTRSLPTD 342
           +Y VLLI+ +G+VTRS+ TD
Sbjct: 214 QYHVLLIIADGQVTRSVDTD 233


>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 453

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 283 KYCVLLIVLEGKVTRSLPTD 342
           +Y VLLI+ +G+VTRS+ TD
Sbjct: 234 QYHVLLIIADGQVTRSVDTD 253


>At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 433

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 283 KYCVLLIVLEGKVTRSLPTD 342
           +Y VLLI+ +G+VTRS+ TD
Sbjct: 214 QYHVLLIIADGQVTRSVDTD 233


>At2g26110.1 68415.m03133 expressed protein 
          Length = 309

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 180 LFVYLNLILATITVFEKFGSVNNN 251
           LFV+LNL++ TI +   F S +N+
Sbjct: 54  LFVFLNLMIGTIAISSSFSSKSND 77


>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 491 CHVLMSIVCTEWKKRLYLICTRQFKGF 411
           C   ++I   E KK++Y ICT  ++GF
Sbjct: 110 CAKGLAISLEEAKKKIYAICTTSYQGF 136


>At2g39190.2 68415.m04814 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 814

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 492 LIPSTNWKRFSLSYRKVIGPYLLINGVSD 578
           + P  N +RF+L     +G   LING+ D
Sbjct: 503 ITPGVNTRRFTLDLEYALGEVKLINGIPD 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,571
Number of Sequences: 28952
Number of extensions: 307637
Number of successful extensions: 573
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)