Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0361.Seq
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 113 2e-26
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 97 2e-21
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 92 4e-20
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 87 2e-18
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 86 3e-18
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 86 3e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 85 6e-18
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 84 1e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 79 4e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 79 5e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 79 5e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 76 4e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 75 6e-15
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 71 1e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 71 1e-13
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 70 2e-13
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 69 4e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 64 9e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 64 2e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 62 4e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 61 9e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 4e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 55 7e-09
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 48 1e-06
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 48 1e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 44 1e-05
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 44 1e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 42 4e-05
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 42 6e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 35 0.008
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 33 0.026
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 1.7
SPAC8C9.20 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 5.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.0
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 9.0
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 113 bits (272), Expect = 2e-26
Identities = 50/93 (53%), Positives = 72/93 (77%)
Frame = +1
Query: 241 QEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNS 420
Q+ W PA+ +HGDK Q ERD VL +F+ G++ I+VATDVA+RG+DV GI V N+D+P +
Sbjct: 391 QDGW-PALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGN 449
Query: 421 SEDYIHRIGRTGRSKSKGTSYAFWYPVKFRQAK 519
+EDY+HRIGRTGR+ +KGT+Y ++ +QA+
Sbjct: 450 TEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAR 482
Score = 76.6 bits (180), Expect = 2e-15
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPG 181
KEV++LA DYL DYIQ+ +GSL L+A+HNI QIV++ +K +L ++E+ + ++
Sbjct: 312 KEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRD-- 369
Query: 182 AKTIIFVETKRKAENISRNIRRYG 253
K +IF TKR A++I+R +R+ G
Sbjct: 370 NKVLIFTGTKRVADDITRFLRQDG 393
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 96.7 bits (230), Expect = 2e-21
Identities = 42/79 (53%), Positives = 58/79 (73%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYI 435
PA +HGD+TQ+ER+ L F+ GR SI+VAT VA+RGLD+ + VIN+D P +DY+
Sbjct: 456 PATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYV 515
Query: 436 HRIGRTGRSKSKGTSYAFW 492
HRIGRTGR+ + G + AF+
Sbjct: 516 HRIGRTGRAGNTGQAVAFF 534
Score = 44.8 bits (101), Expect = 8e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPG 181
++++ LA D+L DY+ +++G + S + NI Q V ++ EK + L +L + P
Sbjct: 376 RDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTL----PPE 430
Query: 182 AKTIIFVETKRKAENIS 232
T+IFVETKR A+ ++
Sbjct: 431 GLTLIFVETKRMADTLT 447
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 92.3 bits (219), Expect = 4e-20
Identities = 42/79 (53%), Positives = 57/79 (72%)
Frame = +1
Query: 262 VCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHR 441
V +HGD +Q R + L FK G+ +LVATDVAARGLD+ ++ VIN +P + EDY+HR
Sbjct: 444 VGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHR 503
Query: 442 IGRTGRSKSKGTSYAFWYP 498
IGRTGR+ +KGT+ F+ P
Sbjct: 504 IGRTGRANTKGTAITFFTP 522
Score = 48.8 bits (111), Expect = 5e-07
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE-HEKENKLNVLLQEIGQSQEP 178
+ V+ LA +L D ++I IGS +L+A+ NI QIV+I + KE L+ LL++ S
Sbjct: 357 ESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGK 416
Query: 179 GAKTIIFVETKRKAENISRNIRR 247
K +IFV K++A + + R
Sbjct: 417 DDKILIFVLYKKEAARVEGTLAR 439
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 86.6 bits (205), Expect = 2e-18
Identities = 37/75 (49%), Positives = 54/75 (72%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIG 447
+HG+ Q +R+E L +F++G +L+ATD+ ARG+D G+K VINFD+P S YIHRIG
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIG 377
Query: 448 RTGRSKSKGTSYAFW 492
RTGR+ + G + F+
Sbjct: 378 RTGRAGNTGQAVTFF 392
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 85.8 bits (203), Expect = 3e-18
Identities = 39/89 (43%), Positives = 56/89 (62%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDY 411
K+ I AV +HG K+Q++R+ + Q + A ILVATD+A RG+D+ + V+N++
Sbjct: 534 KQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNM 593
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFWYP 498
S EDY HRIGRTGR+ GT+ F P
Sbjct: 594 AKSIEDYTHRIGRTGRAGKSGTAITFLGP 622
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 85.8 bits (203), Expect = 3e-18
Identities = 39/98 (39%), Positives = 61/98 (62%)
Frame = +1
Query: 196 FC*NQEKS*EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 375
FC ++ K ++ +E MHG+ Q+ERD ++ F++G + +L+ TD+ ARG+D
Sbjct: 266 FCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGID 325
Query: 376 VDGIK*VINFDYPNSSEDYIHRIGRTGRSKSKGTSYAF 489
V + VIN+D P + E+YIHRIGR+GR KG + F
Sbjct: 326 VQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINF 363
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 85.0 bits (201), Expect = 6e-18
Identities = 37/83 (44%), Positives = 53/83 (63%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIG 447
+HG K Q +RD + +K G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+G
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 448 RTGRSKSKGTSYAFWYPVKFRQA 516
RTGR+ G + F P + + A
Sbjct: 758 RTGRAGHTGVAVTFITPEQEKYA 780
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 83.8 bits (198), Expect = 1e-17
Identities = 37/74 (50%), Positives = 51/74 (68%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIG 447
MHGD Q +RD ++++F+ G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIG
Sbjct: 288 MHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIG 347
Query: 448 RTGRSKSKGTSYAF 489
R GR KG S F
Sbjct: 348 RGGRFGRKGVSINF 361
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 79.0 bits (186), Expect = 4e-16
Identities = 35/83 (42%), Positives = 53/83 (63%)
Frame = +1
Query: 241 QEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNS 420
+E P++C+HG Q+ER + FK+ I VATDV RG+D++ + VIN+D P+S
Sbjct: 316 RECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDS 375
Query: 421 SEDYIHRIGRTGRSKSKGTSYAF 489
+ Y+HR+GR GR +KG + F
Sbjct: 376 PDSYLHRVGRAGRFGTKGLAITF 398
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 78.6 bits (185), Expect = 5e-16
Identities = 39/76 (51%), Positives = 49/76 (64%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIH 438
A+ +HG +Q R L +FK G S LVATDVAARGLD+ + VIN+D P S+ YIH
Sbjct: 312 AIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
Query: 439 RIGRTGRSKSKGTSYA 486
R+GRT R+ G S A
Sbjct: 372 RVGRTARAGRAGKSIA 387
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 78.6 bits (185), Expect = 5e-16
Identities = 36/71 (50%), Positives = 48/71 (67%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIG 447
+H + Q+ER L +F+ A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+G
Sbjct: 288 LHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVG 347
Query: 448 RTGRSKSKGTS 480
RT R+ G S
Sbjct: 348 RTARAGRSGES 358
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 75.8 bits (178), Expect = 4e-15
Identities = 33/74 (44%), Positives = 52/74 (70%)
Frame = +1
Query: 253 LPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDY 432
L A +HG +Q++R L F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y
Sbjct: 529 LNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVY 588
Query: 433 IHRIGRTGRSKSKG 474
+HR+GRT R+ G
Sbjct: 589 LHRVGRTARAGRSG 602
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 74.9 bits (176), Expect = 6e-15
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 253 LPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDY 432
LP + +HG + QQ R ++F IL+ T+VAARGLD+ + ++ +D P+ DY
Sbjct: 361 LPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDY 420
Query: 433 IHRIGRTGR-SKSKGTSYAFWYP 498
IHR+GRT R +K G S F P
Sbjct: 421 IHRVGRTARGTKGTGKSLMFLAP 443
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 70.9 bits (166), Expect = 1e-13
Identities = 31/86 (36%), Positives = 49/86 (56%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDY 411
K+ E+ H Q R+ V + F+ G LV +D+ RG+D+ + VINFD+
Sbjct: 299 KKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDF 358
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAF 489
P ++E Y+HRIGR+GR +G + +F
Sbjct: 359 PKNAETYLHRIGRSGRFGHRGLAISF 384
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/92 (35%), Positives = 54/92 (58%)
Frame = +1
Query: 244 EIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSS 423
E+ +P+ +H Q++R + L +FK +LV TDVAARG+D+ + VI++ P+++
Sbjct: 411 ELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTA 470
Query: 424 EDYIHRIGRTGRSKSKGTSYAFWYPVKFRQAK 519
+ Y+HR GRT R+ G S P + Q K
Sbjct: 471 DMYVHRSGRTARANEDGVSILMCGPKELSQLK 502
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 69.7 bits (163), Expect = 2e-13
Identities = 31/77 (40%), Positives = 47/77 (61%)
Frame = +1
Query: 253 LPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDY 432
+P +H T +R + F++ ++ IL ATDV ARG+D I V+ P++++DY
Sbjct: 318 IPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDY 377
Query: 433 IHRIGRTGRSKSKGTSY 483
IHRIGRTGR+ G +Y
Sbjct: 378 IHRIGRTGRAGKTGEAY 394
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 68.9 bits (161), Expect = 4e-13
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRAS---ILVATDVAARGLDVDGIK*VINFDYPNSSEDYIH 438
+HG +QQ R L F S IL+ TDVAARGLD+ + V+ +D P S++DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 439 RIGRTGRSKSKGTSYAFWYP 498
RIGRT R+ G + F P
Sbjct: 533 RIGRTARAGHNGAAIMFLLP 552
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 64.5 bits (150), Expect = 9e-12
Identities = 27/73 (36%), Positives = 48/73 (65%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIG 447
++G Q+ R + F+ G+ ++LV TDVA+RG+D+ + VIN+D+P + ++HR+G
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVG 435
Query: 448 RTGRSKSKGTSYA 486
RT R+ G +Y+
Sbjct: 436 RTARAGRTGWAYS 448
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 63.7 bits (148), Expect = 2e-11
Identities = 30/77 (38%), Positives = 39/77 (50%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIG 447
+HG + Q R EV +F R +L TD+ ARGLD + VI D P + YIHR+G
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374
Query: 448 RTGRSKSKGTSYAFWYP 498
RT R G + P
Sbjct: 375 RTARYNRSGNALLLLLP 391
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 62.5 bits (145), Expect = 4e-11
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +1
Query: 265 CMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYP------NSSE 426
C+ G+ +RD ++ F+ G + +LV T+V ARG+DV + V+N+D P +
Sbjct: 381 CLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQ 440
Query: 427 DYIHRIGRTGRSKSKGTSYAFWYPVK 504
Y+HRIGRTGR G S F + K
Sbjct: 441 TYLHRIGRTGRFGRVGVSINFVHDKK 466
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 61.3 bits (142), Expect = 9e-11
Identities = 27/67 (40%), Positives = 45/67 (67%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIGRTGRS 462
++ ER +++ +F G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R+
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA 531
Query: 463 KSKGTSY 483
+G ++
Sbjct: 532 GREGFAW 538
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 55.6 bits (128), Expect = 4e-09
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 262 VCMHGDKTQQERDEVLYQFKEG-RASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIH 438
V +HG + Q R +FK+ + ++L TD+A+RGLD+ + V+ D P + + H
Sbjct: 286 VALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
Query: 439 RIGRTGRSKSKGTS 480
R GR GR+ G +
Sbjct: 346 RCGRAGRAGRAGVA 359
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.8 bits (126), Expect = 7e-09
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +1
Query: 361 ARGLDVDGIK*VINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFWYP 498
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVP 432
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 286 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIGRTGRSK 465
Q ++ E + QF+ G + LVAT + GLD+ +I +D +S I R+GRTGR K
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKK 576
Query: 466 S 468
S
Sbjct: 577 S 577
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIGRTGRS 462
+Q+ ++E + QF++G + L+AT + GLD+ + +I +D S + R+GRTGR
Sbjct: 477 SQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR- 535
Query: 463 KSKGTSY 483
K KG Y
Sbjct: 536 KRKGYIY 542
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 274 GDKTQQERDEVLYQFKE--GRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIG 447
GD + +ER F+ G+ I++AT G++ G++ V+++ P SS DY+ G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 448 RTGRSKSKGTSYAFW 492
R GR + F+
Sbjct: 1511 RAGRDGKYAIAALFY 1525
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 274 GDKTQQERDEVLYQFKE--GRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIG 447
GD + +ER F+ G+ I++AT G++ G++ V+++ P SS DY+ G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 448 RTGRSKSKGTSYAFW 492
R GR + F+
Sbjct: 1511 RAGRDGKYAIAALFY 1525
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIGRTGRS 462
T + + + L++FK G+ ++L+AT VA G+DV VI F+ + Y+ GR
Sbjct: 408 TFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAM 467
Query: 463 KSK 471
SK
Sbjct: 468 ASK 470
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 41.9 bits (94), Expect = 6e-05
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDY 411
K + L A H + ER + +++ G I+VAT G+D ++ VI+ +
Sbjct: 761 KLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSF 820
Query: 412 PNSSEDYIHRIGRTGR 459
P S E Y GR GR
Sbjct: 821 PKSLEGYYQETGRAGR 836
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 34.7 bits (76), Expect = 0.008
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSSEDYIHRIGRTGR 459
T QER ++ + G+ ++AT+ G+D+ + VI +P S + + GR GR
Sbjct: 595 TVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 33.1 bits (72), Expect = 0.026
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +1
Query: 196 FC*NQEKS*EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 375
FC N E S + +++ + A + G+ ER+ ++ F++ + +LV V G D
Sbjct: 271 FCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTD 330
Query: 376 VDGIK*VINFDYPNSSEDYI-HRIGR 450
+ I + P SS + + IGR
Sbjct: 331 IPNID-CLMIARPTSSPNLLTQMIGR 355
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 342 KNTSTTFLELIQNFISFLLSFIAMHTNSWQPYL 244
KNTS+ + ++FIS L+ A + +QPYL
Sbjct: 1725 KNTSSPVPHIRESFISLLIYLPATFGSRFQPYL 1757
>SPAC8C9.20 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 499 RGTRKHMMFLLILNVQFSQY 440
RG RKH + LL + VQF Y
Sbjct: 69 RGFRKHFLLLLKMEVQFCYY 88
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 221 QLFSWFQQKLLFSHQVLDFVQFLA 150
+L SW+ + +SH+V+D V + A
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTA 332
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 466 ILNVQFSQYDGCNPPTNLDNQNLLPI 389
+++ + ++YDG P T NQN L I
Sbjct: 27 LISQRGNEYDGITPATKEKNQNKLEI 52
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 375 IKPSSCNISCYKNTSTTFLELIQNFISFLLSFIAMHTNSWQPYLLMFL 232
+ PSS S N+ ++ + I+N+IS +L +T+S L F+
Sbjct: 252 VLPSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPFI 299
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 303 FISFLLSFIAMHTNSWQ-PYLLMFLDMFSAFLLV 205
FIS + S I N + +LL FL +FS FLL+
Sbjct: 86 FISTVFSIIKFLLNRRKVSFLLSFLLLFSLFLLI 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,287
Number of Sequences: 5004
Number of extensions: 42182
Number of successful extensions: 166
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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