Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0361.Seq
         (521 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...   101   1e-23
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   4.7  
CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    23   4.7  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score =  101 bits (242), Expect = 1e-23
 Identities = 43/85 (50%), Positives = 59/85 (69%)
 Frame = +1

Query: 244 EIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK*VINFDYPNSS 423
           E   P   +HGD+ Q+ER+  LY FK GR  +L+AT VAARGLD+  +  V+N+D P S 
Sbjct: 445 ETQFPTTSIHGDRLQREREMALYDFKSGRMDVLIATSVAARGLDIKNVNHVVNYDLPKSI 504

Query: 424 EDYIHRIGRTGRSKSKGTSYAFWYP 498
           +DY+HRIGRTGR  +KG + +F+ P
Sbjct: 505 DDYVHRIGRTGRVGNKGRATSFYDP 529



 Score = 35.1 bits (77), Expect = 0.001
 Identities = 23/76 (30%), Positives = 44/76 (57%)
 Frame = +2

Query: 5   EVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGA 184
           E+++LA  +L +YI + +G +   A  ++ Q + + ++ +K  KL    +EI     P  
Sbjct: 371 EIQELAGKFLHNYICVFVGIVG-GACADVEQTIHLVEKFKKRKKL----EEILNGGNPKG 425

Query: 185 KTIIFVETKRKAENIS 232
            T++FVETKR A+ ++
Sbjct: 426 -TLVFVETKRNADYLA 440


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 435 PSYWENWTFKIKRNI 479
           PS W  W+  +KR +
Sbjct: 219 PSLWNKWSLSVKRRL 233


>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 262 VCMHGDKTQQERDEVLYQFKEGRASILVATDVAAR 366
           +C+     + E DE+L QF E  AS +  T ++AR
Sbjct: 545 LCLQNVLLEPETDELLLQFYE--ASAIWLTQLSAR 577


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,695
Number of Sequences: 2352
Number of extensions: 9476
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)