Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0359.Seq
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 30 1.7
11_02_0074 + 8025319-8025340,8025510-8025726,8026066-8026345 29 3.0
09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548 29 4.0
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 29 4.0
01_06_0051 + 25988439-25989068,25989445-25989693,25989952-259900... 29 4.0
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 29 4.0
12_02_0541 + 20162313-20162374,20162670-20163419,20164627-201648... 28 7.0
01_01_0115 - 856957-858055,858479-858538,858802-859583 28 7.0
12_02_0679 - 21870084-21870689,21870780-21870977 27 9.2
11_03_0191 - 11366831-11367676 27 9.2
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 27 9.2
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464... 27 9.2
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 27 9.2
03_05_0376 - 23598026-23598136,23598395-23598484,23598870-235989... 27 9.2
03_02_0287 + 7104144-7106069 27 9.2
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 105 QSRPPVLQALTYTPWLGVVVSAPRNDVPNPYPK 7
Q PP + + Y+P G VS P PN P+
Sbjct: 24 QGMPPTMPTMPYSPHAGTQVSTPSKIDPNQIPR 56
>11_02_0074 + 8025319-8025340,8025510-8025726,8026066-8026345
Length = 172
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 156 WLTDLMYGPRLQPMWLNLVTSEKPGASNK 242
WL+ ++ G L+ +W LV ++K A K
Sbjct: 14 WLSSMLLGEELELLWAKLVVAKKEAAGKK 42
>09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548
Length = 487
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Frame = +1
Query: 223 SPELRIKWPS------RAVRSLFRIG----RWRHEEYKLFHQYTCNVRADI 345
SP R+ WP+ RA+R L +G W+HEE+ TC D+
Sbjct: 417 SPGRRVAWPTAAEFKHRALRELVIVGYRPSEWQHEEFVSLMMSTCVALRDV 467
>03_02_0985 - 12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +2
Query: 380 DTEVHQTAATKSNDSKRPYNVLWAQLNDLCGN-IGFPPRALAL-------SQLRDQHPVR 535
D + H+T+ + + +N W DL GN + +AL+ S +D+ +R
Sbjct: 860 DRDEHKTSKKTKKEDRHYFNKDWKNEYDLAGNKVRDETKALSAKAKMSKDSCEQDEFSLR 919
Query: 536 QQATSNFDLLHSMRR 580
++ S FD+L +R
Sbjct: 920 KEKASRFDILEKTKR 934
>01_06_0051 +
25988439-25989068,25989445-25989693,25989952-25990074,
25990246-25990464
Length = 406
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = +3
Query: 48 PQLQAMVCRLRLAILAAGTGGAFVSTLHRAAEDAA--KWLTDLMYGPRLQPMWLNLVTSE 221
P V + AAG F +T+ AA DAA W L G L WL + T E
Sbjct: 85 PSKDQFVAYMEAYAAAAGVAPRFGATVEEAAFDAAVGAWRVRLDGGEVLMARWLVVATGE 144
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 429 VRTTFCGHSSMISAEILVFHLARSHYHSCATNTQFVNR 542
++ CGH+++ SA L + H+ A +FV R
Sbjct: 295 LQVNLCGHATLASAHFLFTTVLAKQQHAAAAMVEFVTR 332
>12_02_0541 +
20162313-20162374,20162670-20163419,20164627-20164820,
20165001-20165074,20165094-20165114
Length = 366
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 126 KSTRRPRQSRPPVLQALTYTPWLGVVVSAPRNDVPNP 16
KSTR P + P +A T PW G+ + A +N P P
Sbjct: 247 KSTRPPGKKPKPDPEATTSEPW-GLRLVAIQNHTPTP 282
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 367 RGHPSEMVCQHVRYKCTDEKVCILRVSNGQY 275
RG P E CTD+K +++ NG Y
Sbjct: 57 RGDPPECGVASYELTCTDDKPATIQIDNGTY 87
>12_02_0679 - 21870084-21870689,21870780-21870977
Length = 267
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 189 QPMWLNLVTSEKPGASNKMAESCCPISVPYWPLETRRIQT 308
+P+ +V S+ A + +CCPI+V W I+T
Sbjct: 135 KPVEPPIVRSKFSNACGTLVRTCCPINVKLWETVDDNIKT 174
>11_03_0191 - 11366831-11367676
Length = 281
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -2
Query: 126 KSTRRPRQSRPPVLQALTYTPWLGVVVSAPRNDVPNPYPKS 4
KSTR P + P L+A T PW G+ A +D P P P S
Sbjct: 237 KSTRPPGKKPKPDLEATTSEPW-GLKF-ARASDHPLPAPGS 275
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +3
Query: 468 AEILVFHLARSHYHSCATNTQF---VNRLLVILTYFIRCGEVKRTDFLYQNVPVK 623
A + H AR + AT F N +L ++RCG+V+ L+ + P +
Sbjct: 209 AHLGALHTARWAHAYLATTCSFPITTNLATALLNMYMRCGDVQTACSLFHSTPTR 263
>08_01_0535 -
4638954-4639127,4639894-4639944,4640287-4640352,
4640492-4640557,4640701-4640892,4641282-4641780,
4642009-4642364
Length = 467
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2
Query: 14 YGFGTSLRGALTTTPSHGV*VKACNTGGRDWRGLRVDFASS 136
YG G + GA TTT SHG GG DW V S+
Sbjct: 2 YGGGAAAGGATTTTGSHG-------GGGGDWWSAAVSSCSA 35
>06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 86 NTGGRDWRGLRVDFASSSRRRCQMAHRSDVR 178
+ G +W+GL DF + C A R DVR
Sbjct: 916 SAGSTEWKGLLKDFWERFNKYCGDASRLDVR 946
>03_05_0376 -
23598026-23598136,23598395-23598484,23598870-23598935,
23599743-23599811,23599890-23599998,23600135-23600232,
23600339-23600420,23601163-23601242,23601346-23601516,
23601671-23601735,23601842-23601986,23602072-23602245,
23602498-23602572,23602831-23602959,23603295-23603432,
23603509-23603610,23604008-23604112,23604282-23604399,
23605752-23605909,23606159-23606261,23606515-23606582,
23606940-23607016,23608635-23608806
Length = 834
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 51 QLQAMVCRLRLA--ILAAGTGGAFVSTLHRAAEDAAKWLTDLMYG---PRLQPMWLNL 209
+L+ ++ RLR+ A+ TGG+F + +A +WLT + P L P ++N+
Sbjct: 288 ELEKLLDRLRIPQEFAASLTGGSFEESRMLKNVEACEWLTGAIRSLEVPNLDPCYVNM 345
>03_02_0287 + 7104144-7106069
Length = 641
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +3
Query: 444 CGHSSMISAEILVFHLARSHYHSCATNTQFVNRLLVILTYFIRCGEVKRTDFLYQNVPVK 623
C H+ ++ + +FH + Y C +T + ++ R G+ +R + + N+ VK
Sbjct: 380 CAHAGLVDKGLEIFHSIKEQY--CIEHT--ADHYACVIDLLSRSGQFERAEKMIGNMAVK 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,841
Number of Sequences: 37544
Number of extensions: 442555
Number of successful extensions: 1449
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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