Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0359.Seq
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65) 60 1e-09
SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08) 33 0.19
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 29 3.1
SB_29977| Best HMM Match : IL8 (HMM E-Value=1) 29 3.1
SB_52147| Best HMM Match : EGF (HMM E-Value=0) 29 4.1
SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_42821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 5.4
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 28 5.4
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_34364| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 27 9.4
>SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)
Length = 963
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Frame = +2
Query: 290 DTKNTNFFISTLVTYVLTYHLGWVSTVSPYDTEVHQTAATKSND-------SKRPYNVLW 448
+ + T+FF+++L+T VLT+HL WV TV P +T K + PYN LW
Sbjct: 317 NNRETSFFLASLLTAVLTHHLAWVPTVMPAGAAPSRTYLDKHSSKTLDLLVQSHPYNPLW 376
Query: 449 AQLNDLCGNIGFP 487
AQL+DL G IG P
Sbjct: 377 AQLSDLYGAIGSP 389
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 522 NTQFVNRLLVILTYFIRCGEV 584
N++ VN+++ IL+YFIRC EV
Sbjct: 401 NSKLVNQVIYILSYFIRCTEV 421
>SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08)
Length = 433
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/91 (26%), Positives = 44/91 (48%)
Frame = -2
Query: 342 VSTYVTSVLMKKFVFFVSPTANTEQRSDSTTRPFYSKLRASHS*LDSTTSAANGARTSDL 163
+STY T +L F T+N + +S STTR +Y A + ++ +AA
Sbjct: 61 ISTYSTQILPLLFSHLGYSTSNNKDQSSSTTRTYY----ALETFCENLANAAKENIIPYF 116
Query: 162 *AIWQRLRLLDAKSTRRPRQSRPPVLQALTY 70
+I + ++++ AK + + R P L+ T+
Sbjct: 117 SSIVELIKVIVAKLLKLLEEDRDPDLRRCTF 147
>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 920
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 386 EVHQTAATKSNDSKRPYNVLWAQLNDLCGNIGFPP---RALALSQLRDQHPVRQQA 544
E + S +RPY L +N+L I PP R +A LR+ PVR+++
Sbjct: 516 ETYPVRQVASVQPRRPYLPLQIAINELHDRIPTPPEIRREIANQCLREMSPVREES 571
>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1436
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 130 CKVDTKAPPVPAASIASLNLHTMAWSCGECSTQRRTKSISE 8
C +++++ VP A L H A C T +TK +SE
Sbjct: 1328 CGINSQSSAVPTAPPCKLRQHKPALLANSCPTVHKTKEMSE 1368
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 199 HIGCKRGPYIRSVSHLAASSAARCKVDTKAPPVPAASIASLNLHTMAWSCGECS 38
HI C G Y +V+ + A C +K P V A +A N + EC+
Sbjct: 510 HITCANGTYTTAVNQ---TECATCPAGSKCPDVTQAPVACTNGYYSGDGATECT 560
>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
Length = 521
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 382 H*GPPNGCDEVKRLQTSVQRSVGTAQ*SLRKYWFSTSRART-ITVARPTPSSS 537
H P +GC E + S+Q + T +++K W T+R T I + R PS +
Sbjct: 349 HRQPQDGCIETYQSFESLQNHLDTGGHTIKKKWAETTREMTGIYLHRVMPSGN 401
>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
Length = 364
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 188 QTGP-VHQICEPFGSVFGCSMQSRHEG-PASPGRQYCKP*PTHHGL 57
Q+ P VH C P GS F CS ++H G + C P HG+
Sbjct: 212 QSNPCVHGTCIPDGSSFRCSCDAKHVGEKCNIVVNVCLSNPCAHGI 257
>SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 377 YDTEVHQTAATKSNDSK--RPYNVLWAQLNDLCGNIGFPPRALALSQ-LRDQHPVRQQAT 547
Y+T H + TKS DS P + W Q D+CG + + L++ L ++H R+ A
Sbjct: 392 YNTR-HVNSKTKSYDSDFVNPTDSEWKQEKDVCGEVSKNRQKTKLNRLLANEHERRRVAQ 450
Query: 548 SN 553
N
Sbjct: 451 LN 452
>SB_42821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 103 LAGPSCRLCIEQPKTLPNGSQI*CTGPVCSRCG*I*SRVRSPELRIKWPSRAVRSLFRIG 282
+ G SC+ CI K+LP ++ PV R R+R P R + PS S G
Sbjct: 175 VTGSSCQACIYPHKSLPKNRRLPSRSPVLRRN----LRIRRPAPRQQKPSSGSPSCTVKG 230
Query: 283 RWRH 294
R ++
Sbjct: 231 RQQY 234
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 362 STVSPY---DTEVHQTAATKSNDSKRPYNVLWAQLNDLCGNIGFPPRALALSQLRDQHPV 532
+TV+P+ +TE+HQ A+ ND++ + L + + P ++S L + P
Sbjct: 331 TTVAPFKNVETELHQKDASSDNDNESASRIGGCVLRTVSRPLSAPMPRRSISDLARELPT 390
Query: 533 RQQATSNFDL 562
+Q+ + L
Sbjct: 391 PRQSVRSVSL 400
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 251 LGHFIRSSGLLTRD*IQPHRLQTGPVHQ-ICEPF 153
LG+ + S +L R +PHRL T P H+ IC +
Sbjct: 216 LGNTLASCQVLCRSCKEPHRLDTLPAHEAICTTY 249
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 164 CEPFGSVFGCSMQSRHEGPASPGRQYCKP*PTHHG 60
C S F C + GP RQYC P P +G
Sbjct: 291 CVATDSSFDCDCVAGWTGPLCQTRQYCIPNPCQNG 325
>SB_34364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 192 PMWLNLVTSEKPGASNKMAESCCPISVPYWPLETRRIQ 305
P+W S+K G K+ +C +SVP PL+ + ++
Sbjct: 67 PLWTP--PSKKTGKGKKLPTTCVNVSVPVPPLKEKDVE 102
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 198 WLNLVTSEKPGASNKMAESCCPISVPY--WPLETR 296
W + + G SN++ SCC + VP W ++ +
Sbjct: 164 WFTSGWAARQGVSNRVPSSCCKVPVPTCGWDMDVK 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,332,411
Number of Sequences: 59808
Number of extensions: 492861
Number of successful extensions: 1497
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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