Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0359.Seq
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 82   SLNLHTMAWSCGEC 41
            S+ LH  AWS G C
Sbjct: 1476 SITLHLNAWSDGGC 1489


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 101 DWRGLRVDFASSSRRRCQM 157
           +W+ L  DF S  RR+  M
Sbjct: 40  EWKYLDYDFGSDERRQAAM 58


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 194 RLQTGPVHQICEPFGSVFGCSMQ 126
           R  TG    +C+  G  F CS Q
Sbjct: 196 RTHTGEKPYVCKACGKGFTCSKQ 218


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 470 GNIGFPPRALALSQLRD 520
           GN+G   +ALAL  LRD
Sbjct: 219 GNMGLWDQALALRWLRD 235


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 470 GNIGFPPRALALSQLRD 520
           GN+G   +ALAL  LRD
Sbjct: 219 GNMGLWDQALALRWLRD 235


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 367 RGHPSEMVCQHVRYKCTDEKVCIL 296
           +G     V + + Y C +EK CI+
Sbjct: 131 KGFFKRTVRKDLSYACREEKSCII 154


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 367 RGHPSEMVCQHVRYKCTDEKVCIL 296
           +G     V + + Y C +EK CI+
Sbjct: 131 KGFFKRTVRKDLSYACREEKSCII 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,740
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)