Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0359.Seq
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              29   1.9  
At3g12470.1 68416.m01552 expressed protein                             29   1.9  
At2g25830.1 68415.m03099 YebC-related contains Pfam profile PF01...    29   2.5  
At2g31790.1 68415.m03881 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.8  
At1g09410.1 68414.m01052 pentatricopeptide (PPR) repeat-containi...    28   5.8  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 540 C*RTGCWSRNCDSASARGGKPIFPQRSLSCAHRTLYGRLESF 415
           C R G W+R+C SA    G P+    S + A+    GR++ +
Sbjct: 131 CGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRY 172


>At3g12470.1 68416.m01552 expressed protein
          Length = 220

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 7   LRIWIWYVVAWSTHHNSKPWCVG*GLQYWRPGLAGP 114
           +R WI  V +++ +H+  P  VG G+Q WRP  + P
Sbjct: 37  IRRWIRSVRSYNRNHSVHPLVVGIGVQ-WRPDSSDP 71


>At2g25830.1 68415.m03099 YebC-related contains Pfam profile
           PF01709: Domain of unknown function; contains TIGRFAM
           TIGR01033: conserved hypothetical protein; similar to
           YebC (GI:5771432) [Legionella pneumophila]
          Length = 331

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 323 LVTYVLTYHLGWVSTVSPYDTEVHQTAATKSNDSKRPYNVL 445
           L++  +T  L  +S++SP+ T  H TAA++ +D +  +  L
Sbjct: 31  LLSLTMTNTLSSLSSISPHTTTSHFTAASQQSDDQNCFRKL 71


>At2g31790.1 68415.m03881 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 457

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 292 VSNGQYGTEIGQHDSAILFEAPGFSLVTR--FNHIGCKRGPY 173
           ++ G Y   + +H++  L   PGF L+++       C++G Y
Sbjct: 144 INEGTYDVPVDRHENPTLASFPGFPLLSQDDLPSFACEKGSY 185


>At1g09410.1 68414.m01052 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 705

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +3

Query: 429 VRTTFCGHSSMIS--AEILVFHLARSHYHSCATNTQF---VNRLLVILTYFIRCGEVKRT 593
           VR TF    S++S  A +   H  +   H+     QF   V    V++T +I+CGE+ ++
Sbjct: 327 VRPTFPTLISILSVCASLASLHHGKQ-VHAQLVRCQFDVDVYVASVLMTMYIKCGELVKS 385

Query: 594 DFLYQNVPVKE 626
             ++   P K+
Sbjct: 386 KLIFDRFPSKD 396


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 429 VRTTFCGHSSMISAEIL-VFHLARSHYHSCATNTQFVNRLLVILTYFIRCGEVKRTDFLY 605
           VR T   +++MI+A I     L +++   C    +       ++T F+R G     +FLY
Sbjct: 109 VRVT-TSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLY 167

Query: 606 QNVPVK 623
              PVK
Sbjct: 168 AETPVK 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,547
Number of Sequences: 28952
Number of extensions: 330836
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)