Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0358.Seq
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7QYA3 Cluster: GLP_387_53602_55983; n=1; Giardia lambl...    35   2.2  
UniRef50_Q54T73 Cluster: Putative cell surface glycoprotein; n=1...    34   3.9  
UniRef50_UPI0000F2C34A Cluster: PREDICTED: similar to Macrophage...    33   5.1  
UniRef50_Q259U6 Cluster: H0913C04.10 protein; n=7; Oryza sativa|...    33   5.1  
UniRef50_Q89GH6 Cluster: ABC transporter permease protein; n=1; ...    33   8.9  

>UniRef50_Q7QYA3 Cluster: GLP_387_53602_55983; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_387_53602_55983 - Giardia lamblia
           ATCC 50803
          Length = 793

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 382 YHRGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASSRIKCLYLLLPTIR 236
           +HR   S +   A  PPS  T VST+ C    ++ +R++  Y+  P +R
Sbjct: 520 FHRRCLSLSSIAAELPPSGPTTVSTATCVGTLSSQNRLQLAYMSNPLVR 568


>UniRef50_Q54T73 Cluster: Putative cell surface glycoprotein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative cell surface
           glycoprotein - Dictyostelium discoideum AX4
          Length = 707

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
 Frame = -2

Query: 668 TRFLLST*YINYNTFSYKNANGVSSK*LNNYGLLRT----PFNFLSLSYYIHVSVRHYTR 501
           T+F+++  Y+N +TF +KN + ++   +NN  L +T     FNF    + I+++  ++T 
Sbjct: 344 TKFIMNWCYLNISTFDFKNVSAIT---INNNRLHQTFPVEVFNFNQDKFKININDNNFTG 400

Query: 500 TV 495
           TV
Sbjct: 401 TV 402


>UniRef50_UPI0000F2C34A Cluster: PREDICTED: similar to Macrophage
           colony-stimulating factor 1 precursor (CSF-1) (MCSF)
           (M-CSF) (Lanimostim); n=1; Monodelphis domestica|Rep:
           PREDICTED: similar to Macrophage colony-stimulating
           factor 1 precursor (CSF-1) (MCSF) (M-CSF) (Lanimostim) -
           Monodelphis domestica
          Length = 845

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 24/89 (26%), Positives = 34/89 (38%)
 Frame = -2

Query: 563 TPFNFLSLSYYIHVSVRHYTRTVTIRCEASSGSDVNKSVRFVREFPSLCSLVFCATVCRY 384
           TP   L    ++ V  +        + +     D NK V  V     +C LV+ +T  + 
Sbjct: 201 TPVKILEKIQHVFVETKRLLSEDWHKFDQDCTKDFNKCVSSVCAHRPICLLVYASTGLKG 260

Query: 383 LSSWPFLLHSERSSAAALRCDVCLDLALH 297
           L SW F     R     L   VC + ALH
Sbjct: 261 LGSWNFEAQVWRGRGVHLSTCVCTE-ALH 288


>UniRef50_Q259U6 Cluster: H0913C04.10 protein; n=7; Oryza
           sativa|Rep: H0913C04.10 protein - Oryza sativa (Rice)
          Length = 491

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
 Frame = -3

Query: 532 IYMSPYATILVL*QLGARQAPGQTLINQFGLFASFLPCVPLYSAR----LFVAT----YH 377
           +Y   Y        LG    P   L++  G   S++PC   Y  R    L  A+    +H
Sbjct: 81  LYPHSYGGYAFTVSLGTPPQPLPVLLDT-GSHLSWVPCTSSYQCRNCSSLSAASPLHVFH 139

Query: 376 RGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASS 275
              SS +R    R PS +   S  H +DCRAASS
Sbjct: 140 PKNSSSSRLIGCRNPSCLWIHSPDHLSDCRAASS 173


>UniRef50_Q89GH6 Cluster: ABC transporter permease protein; n=1;
           Bradyrhizobium japonicum|Rep: ABC transporter permease
           protein - Bradyrhizobium japonicum
          Length = 344

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 442 LFASFLPCVPLYSARLFVATYHRGLSSFTRNGAARPPSDVTCVSTSHCTDCR 287
           LF S +  V L +    + T  R L SFT +GA+R     + +STS  T+ R
Sbjct: 292 LFGSLIVLVVLVARDGVLGTLQRVLRSFTSSGASRSRHTASTISTSTVTESR 343


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,354,232
Number of Sequences: 1657284
Number of extensions: 11052495
Number of successful extensions: 23613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23607
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)