Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0358.Seq
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.2  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   7.3  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   7.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
 Frame = -1

Query: 282 LHLV*NVCIYYFRQFEYFSLRSYGD*CVIYL----LIFQY*AKDYFLN-ISLNLHLDFRY 118
           +HL+  +CIYYF    +F L  Y   C   +    L+F      +F   I   +HL F  
Sbjct: 125 VHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHLLFCC 184

Query: 117 IKN*ENLGFCF-SCTFYFTISL 55
                N+   F  C  YFT+ L
Sbjct: 185 AFIFFNMHLLFLLCLDYFTLHL 206



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 282 LHLV*NVCIYYF-RQFEYFSLRSYGD*CVIYLLIFQY*AKDYFLNISLNLHL 130
           LHL+   CIYYF   F  F++      CV+ +L+  Y    Y+  I   +HL
Sbjct: 204 LHLLFLPCIYYFYSAFIIFTIHLLFY-CVLIILLCIY--YFYYAFILFTVHL 252



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 457 INQFGLFASFLPCVPLYSARLFVATYH 377
           ++ F L   FLPC+  + +   + T H
Sbjct: 199 LDYFTLHLLFLPCIYYFYSAFIIFTIH 225



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 282 LHLV*NVCIYYF 247
           +HL+  VCIYYF
Sbjct: 250 VHLLLLVCIYYF 261



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 282 LHLV*NVCIYYF 247
           +HL+  +CIYYF
Sbjct: 277 MHLLFLLCIYYF 288


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 404 CATVCRYLSSWPFLLHSERSS 342
           CA+ C   +  P +LH  R++
Sbjct: 310 CASTCEQANDTPSILHELRNN 330


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 404 CATVCRYLSSWPFLLHSERSS 342
           CA+ C   +  P +LH  R++
Sbjct: 310 CASTCEQANDTPSILHELRNN 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,561
Number of Sequences: 336
Number of extensions: 3179
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)