Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0358.Seq
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1647 + 35032328-35033803                                         33   0.16 

>04_04_1647 + 35032328-35033803
          Length = 491

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
 Frame = -3

Query: 532 IYMSPYATILVL*QLGARQAPGQTLINQFGLFASFLPCVPLYSAR----LFVAT----YH 377
           +Y   Y        LG    P   L+ + G   S++PC   Y  R    L  A+    +H
Sbjct: 81  LYPHSYGGYAFTVSLGTPPQPLPVLL-ETGSHLSWVPCTSSYQCRNCSSLSAASPLHVFH 139

Query: 376 RGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASS 275
              SS +R    R PS +   S  H +DCRAASS
Sbjct: 140 PKNSSSSRLIGCRNPSCLWIHSPDHLSDCRAASS 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,718
Number of Sequences: 37544
Number of extensions: 285259
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)