Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0357X.Seq
         (545 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7QYA3 Cluster: GLP_387_53602_55983; n=1; Giardia lambl...    35   1.4  
UniRef50_Q259U6 Cluster: H0913C04.10 protein; n=7; Oryza sativa|...    33   3.3  
UniRef50_Q89GH6 Cluster: ABC transporter permease protein; n=1; ...    33   5.7  

>UniRef50_Q7QYA3 Cluster: GLP_387_53602_55983; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_387_53602_55983 - Giardia lamblia
           ATCC 50803
          Length = 793

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 381 YHRGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASSRIKCLYLLLPTIR 235
           +HR   S +   A  PPS  T VST+ C    ++ +R++  Y+  P +R
Sbjct: 520 FHRRCLSLSSIAAELPPSGPTTVSTATCVGTLSSQNRLQLAYMSNPLVR 568


>UniRef50_Q259U6 Cluster: H0913C04.10 protein; n=7; Oryza
           sativa|Rep: H0913C04.10 protein - Oryza sativa (Rice)
          Length = 491

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
 Frame = -3

Query: 531 IYMSPYATILVL*QLGARKAPGQTLINQFGLFASFLPCVPLYSAR----LFVAT----YH 376
           +Y   Y        LG    P   L++  G   S++PC   Y  R    L  A+    +H
Sbjct: 81  LYPHSYGGYAFTVSLGTPPQPLPVLLDT-GSHLSWVPCTSSYQCRNCSSLSAASPLHVFH 139

Query: 375 RGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASS 274
              SS +R    R PS +   S  H +DCRAASS
Sbjct: 140 PKNSSSSRLIGCRNPSCLWIHSPDHLSDCRAASS 173


>UniRef50_Q89GH6 Cluster: ABC transporter permease protein; n=1;
           Bradyrhizobium japonicum|Rep: ABC transporter permease
           protein - Bradyrhizobium japonicum
          Length = 344

 Score = 32.7 bits (71), Expect = 5.7
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 441 LFASFLPCVPLYSARLFVATYHRGLSSFTRNGAARPPSDVTCVSTSHCTDCR 286
           LF S +  V L +    + T  R L SFT +GA+R     + +STS  T+ R
Sbjct: 292 LFGSLIVLVVLVARDGVLGTLQRVLRSFTSSGASRSRHTASTISTSTVTESR 343


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,657,253
Number of Sequences: 1657284
Number of extensions: 8689191
Number of successful extensions: 19634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19631
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)