Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0357X.Seq
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   2.4  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   5.5  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   9.6  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   9.6  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.6  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 417 HKEGNSRTNRTDLLTSDPELSSHLIVTV 500
           H+E   R+++   L  DPE   HL+ TV
Sbjct: 279 HREDKKRSSKPQPLQPDPETVIHLVPTV 306


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 492 QLGARKAPGQTLINQFGLFASFLPCVPLYSARLFVATYHRG 370
           Q+ AR A   T   +FG     +PC  + S R ++ + + G
Sbjct: 342 QIMARAAGASTTKMKFGNRGHNIPCTCMISGRCYITSQNHG 382


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 430 FPSLCPLVFCATVCRYLSSWPFLLHSERSSAAALRCDV 317
           F ++CP + CA  C  LSS   + ++E+ + A +   +
Sbjct: 269 FKNVCPALICAAGCDVLSS-EAIAYNEKLTKAGVESTI 305


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 278 EAARQSVQCEVETHVTSEGGRAAP 349
           E A  S++ +V+THVTS GG + P
Sbjct: 408 EKAPASLE-KVDTHVTSTGGESDP 430


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 IRIVGSNKYKHFIRDEAARQSVQCEV 310
           +R +  N+Y + IR EAAR   +C +
Sbjct: 759 LRTLLDNRYYYGIRQEAARALARCAI 784


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 161 YFLNISLNLHLDFRYIKN*ENLGFCFSCTFYF 66
           Y + +S N+ + + Y+ N E   FC   T++F
Sbjct: 643 YGVKLSKNMWISWAYVDNCEANFFCKDGTYFF 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,114
Number of Sequences: 5004
Number of extensions: 37798
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)