Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0357X.Seq
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1647 + 35032328-35033803                                         33   0.11 
07_01_0217 + 1620625-1621419,1621982-1622152,1622581-1622865,162...    27   7.4  
12_01_0400 + 3169597-3170504,3170510-3171269                           27   9.8  
11_04_0312 - 16259612-16260231,16260264-16262796                       27   9.8  
10_01_0316 + 3479574-3482679,3482766-3483127                           27   9.8  
04_04_0500 - 25677767-25680850                                         27   9.8  

>04_04_1647 + 35032328-35033803
          Length = 491

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
 Frame = -3

Query: 531 IYMSPYATILVL*QLGARKAPGQTLINQFGLFASFLPCVPLYSAR----LFVAT----YH 376
           +Y   Y        LG    P   L+ + G   S++PC   Y  R    L  A+    +H
Sbjct: 81  LYPHSYGGYAFTVSLGTPPQPLPVLL-ETGSHLSWVPCTSSYQCRNCSSLSAASPLHVFH 139

Query: 375 RGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASS 274
              SS +R    R PS +   S  H +DCRAASS
Sbjct: 140 PKNSSSSRLIGCRNPSCLWIHSPDHLSDCRAASS 173


>07_01_0217 +
           1620625-1621419,1621982-1622152,1622581-1622865,
           1623113-1623262
          Length = 466

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 161 YFLNISLNLHLDFRYIKN*ENLGFCFSCTFYFTISL 54
           +F +++  LHL        EN   CF C+ Y+T SL
Sbjct: 430 FFFSLNETLHLSLMIPM--ENRVLCFHCSVYYTASL 463


>12_01_0400 + 3169597-3170504,3170510-3171269
          Length = 555

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -3

Query: 351 NGAARPPSDVTCVSTSHCTDCRAASSRIKCLYLLLPTIRIFQ 226
           NG++ PP  +TC  T+  T+     SR+K   LLL TI I Q
Sbjct: 371 NGSSSPPVILTCDDTTTTTN-TPLRSRLK--LLLLGTITILQ 409


>11_04_0312 - 16259612-16260231,16260264-16262796
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 174 ILKYQQINNTSVAITT*TEIFELSEVINTNILYEMKPHGSQCSA 305
           ++ +Q  NN +  +    +  EL    +T   Y  KP G+QCSA
Sbjct: 838 VIHFQSTNNPTNQLARNCQHLELGRK-STTTAYLSKPKGTQCSA 880


>10_01_0316 + 3479574-3482679,3482766-3483127
          Length = 1155

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 432 SFLPCVPLYSARLFVATYHRGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASS 274
           SFL  +P  S RL + ++ +  SS +   A  PP     +  + C+D  A ++
Sbjct: 44  SFLDSLPPASQRLLLPSWRQSRSSSSSGNATAPPPHCAFLGVT-CSDTGAVAA 95


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 387 ATYHRGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASSRI 268
           ++Y   LSS +R   AR P D +     H   CRA   RI
Sbjct: 43  SSYASLLSSLSRECHARHPFDASPPRARHSQTCRALHGRI 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,673,824
Number of Sequences: 37544
Number of extensions: 231826
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)