Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0357X.Seq
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               29   1.9  
SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_15574| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 292 VSAVRGRDTRHI*GRPRCSVPSEGGKATMIGSDKQS--RRIQGDTRKETREQTELI 453
           V+  RG D + + G  RC+  S  G       +K S   + QG T+K  RE++E +
Sbjct: 778 VTEGRGHDKKGMKGEARCAAESNEGSGHASEHEKASSLSQEQGRTKKTGREKSERV 833


>SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 342 ARPPSDVTCVSTSHCTDCRAASSR 271
           +R PS + C S++HC  CR+ + R
Sbjct: 28  SRCPSSIHCPSSNHCRRCRSIARR 51


>SB_15574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 259 QTFYTR*SRTAVSAVRGRDTRHI*GRPRCSVPSEGGKATMIGSDKQSRR 405
           QT+YTR    +        T H    P CS P  GG A  +    +SR+
Sbjct: 8   QTYYTRERSNSNPLQFHSGTEHEQVTPPCSPPYNGGSANQLSPIDKSRK 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,200,181
Number of Sequences: 59808
Number of extensions: 282102
Number of successful extensions: 722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)