Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0357X.Seq
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putati...    27   8.2  

>At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putative
           similar to subunit 6b of cytochrome c oxidase
           [Arabidopsis thaliana] gi|6518353|dbj|BAA87883
          Length = 164

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 484 CEESSGSDVNKSVRFVREFPSLCP 413
           C  + G D N+  RF + + +LCP
Sbjct: 121 CTTAKGEDANECERFAKYYRALCP 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,454,647
Number of Sequences: 28952
Number of extensions: 190726
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)