Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0353.Seq
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    29   0.72 
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    27   2.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   2.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   6.7  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    26   6.7  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   6.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.9  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   8.9  

>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +2

Query: 224 LKHPNRLDPTMSISP-----TDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRS 370
           LK+P R  P +  SP     T   L+    ST+S+   S P+SPT N+ +   S
Sbjct: 23  LKNPVRFRPAVVSSPSVPEGTYTVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSS 76


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 266 PTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFGWNFRRFYP 400
           P    L +   + +  +  + P +PT  +     SF +NF +FYP
Sbjct: 77  PDVAELGRSTWTFLHAMAANFPKNPTPTQQNDMSSFLYNFSKFYP 121


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 2   LNRFFKEHGSGYPESHILLVQRNYLGLQIQECFEVFERKGSL 127
           +N+ FK HG    + ++ L   +Y+GL  + C +  ++  SL
Sbjct: 275 INQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQWSDKARSL 316


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 236 NRLDPTMSISPTDLSLSQEDSSTISKLGDSLPSSPTLNRTATQRSFG 376
           N+  P   +SP   + S++ +S+++    S+PSS T +  ++   +G
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITKSNISSLDVYG 249


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 222 DSNTPTVLTQQCPFRQQTYL*ARRTLPQYLNSAILCRQVQ 341
           D+++P   ++  P +++  L  R+ LP +     LC+Q+Q
Sbjct: 71  DNSSPEKRSENSPSKRKDILEQRKNLPIWEAHDTLCQQIQ 110


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 146 PGYRGTSRDAALQRLPSQGFRR*HERLKHPNRLDPTMSISPTDLSLSQEDS 298
           P Y   +R   L R PS G       +  P R  P+  +SPT+ +    DS
Sbjct: 481 PSYEDVARIEHLSRPPSPGI------VTPPQRTSPSFFVSPTESTRQSLDS 525


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 518 HQCTNLQRDGQLTPKTDT--VTSVASKHSTLFVPVHN 414
           HQ  +L  DG  T KT T  V+   S  +T + P H+
Sbjct: 813 HQVNSLDGDGSKTLKTPTFFVSQEDSSFNTEYFPAHS 849


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 215 HERLKHPNRLDPTMSISPTDLSLSQEDSSTISKLGDS 325
           HE+L HP     +  I     SLSQ  SS +++LG S
Sbjct: 313 HEKL-HPGTFVRSQKIPAIKASLSQRVSSVMTELGVS 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,248
Number of Sequences: 5004
Number of extensions: 64754
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)