Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0353.Seq
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0321 - 22341267-22342565                                         31   1.3  
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92...    30   2.3  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   4.0  
08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847     28   9.3  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    28   9.3  

>11_06_0321 - 22341267-22342565
          Length = 432

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 336 LDGRESPSLDIVEESSWLKDRSVGEMDIVGSRRLGCLSLSC 214
           + G  +P   ++E  SW+ +    +  I+GSRR G    +C
Sbjct: 387 IGGMSAPGGGVIEICSWIPNNGQPDWKIIGSRRSGSFVYNC 427


>12_01_0121 -
           920988-921296,921556-921620,921874-921923,922009-922106,
           923832-923867,925351-925731,925839-926324,926471-926647
          Length = 533

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 391 SPKVPSKAPLGGSSVQSWT*RQRIAEFRYC 302
           SP  PS+A  G    +SWT +Q+I +   C
Sbjct: 8   SPVTPSEAEAGAEDYESWTLKQKIEDLVNC 37


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 251 LGQDGWGV*VFHVIFEILETAGAAERRLDLFHGIQVF 141
           L + GWG   F +   +   +   E+RLDLFH ++++
Sbjct: 150 LSESGWGE--FEIAITLYFHSDVCEKRLDLFHQLKLY 184


>08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847
          Length = 426

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +3

Query: 111 KEKEAYAIDIENLDTVEQVETPLCSACRLKDFEDNMKDSNTPTVLTQ 251
           KEK+A A D E   T+E  E      CR KD  + + D N     TQ
Sbjct: 207 KEKKAKAKDKEGFKTIEMTEK---FYCRAKDMYEILMDENRWKGFTQ 250


>02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996,
            33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +2

Query: 221  RLKHPNRLDPTMSISPTDLSLSQEDSSTISKLGDSL--PSSPTLNRTATQ------RSFG 376
            R+  P+R  P+  +SP   + S   SS +S +GD      SP+    A Q      RS  
Sbjct: 1130 RMPSPSRNRPSTPVSPCSSTRSDSASSILSYMGDVTRGKRSPSHMEDAHQLRLLYNRSLQ 1189

Query: 377  WNFRRFYPEK 406
            W F   Y ++
Sbjct: 1190 WRFTNAYVDE 1199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,668,186
Number of Sequences: 37544
Number of extensions: 399143
Number of successful extensions: 889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)